ENSG00000137074


Homo sapiens

Features
Gene ID: ENSG00000137074
  
Biological name :APTX
  
Synonyms : aprataxin / APTX / Q7Z2E3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: p21.1
Gene start: 32972606
Gene end: 33025168
  
Corresponding Affymetrix probe sets: 218527_at (Human Genome U133 Plus 2.0 Array)   222338_x_at (Human Genome U133 Plus 2.0 Array)   222658_s_at (Human Genome U133 Plus 2.0 Array)   243132_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000417649
Ensembl peptide - ENSP00000311547
Ensembl peptide - ENSP00000369140
Ensembl peptide - ENSP00000369141
Ensembl peptide - ENSP00000369145
Ensembl peptide - ENSP00000369147
Ensembl peptide - ENSP00000369153
Ensembl peptide - ENSP00000380357
Ensembl peptide - ENSP00000400806
Ensembl peptide - ENSP00000417634
Ensembl peptide - ENSP00000417684
Ensembl peptide - ENSP00000417750
Ensembl peptide - ENSP00000417804
Ensembl peptide - ENSP00000418069
Ensembl peptide - ENSP00000418144
Ensembl peptide - ENSP00000418311
Ensembl peptide - ENSP00000418733
Ensembl peptide - ENSP00000419020
Ensembl peptide - ENSP00000419042
Ensembl peptide - ENSP00000419289
Ensembl peptide - ENSP00000419430
Ensembl peptide - ENSP00000419597
Ensembl peptide - ENSP00000419623
Ensembl peptide - ENSP00000419723
Ensembl peptide - ENSP00000419846
Ensembl peptide - ENSP00000420071
Ensembl peptide - ENSP00000420263
NCBI entrez gene - 54840     See in Manteia.
OMIM - 606350
RefSeq - XM_017014834
RefSeq - XM_017014835
RefSeq - XM_017014836
RefSeq - XM_017014837
RefSeq - XM_017014838
RefSeq - XM_006716792
RefSeq - XM_011517939
RefSeq - NM_001195248
RefSeq - NM_001195249
RefSeq - NM_001195250
RefSeq - NM_001195251
RefSeq - NM_001195252
RefSeq - NM_001195254
RefSeq - NM_175069
RefSeq - NM_175073
RefSeq - XM_006716791
RefSeq - XM_011517938
RefSeq Peptide - NP_001182181
RefSeq Peptide - NP_778239
RefSeq Peptide - NP_778243
RefSeq Peptide - NP_001182177
RefSeq Peptide - NP_001182178
RefSeq Peptide - NP_001182179
RefSeq Peptide - NP_001182180
RefSeq Peptide - NP_001182183
swissprot - F8WBM3
swissprot - E7EVB7
swissprot - F8WBD6
swissprot - A0A0A0MRW7
swissprot - C9J8U3
swissprot - Q6JV79
swissprot - Q7Z2E3
swissprot - C9JZ40
swissprot - E7EUY4
swissprot - F8W6G5
Ensembl - ENSG00000137074
  
Related genetic diseases (OMIM): 208920 - Ataxia, early-onset, with oculomotor apraxia and hypoalbuminemia, 208920
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 aptxENSDARG00000027143Danio rerio
 APTXENSGALG00000001954Gallus gallus
 AptxENSMUSG00000028411Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PNKP / Q96T60 / polynucleotide kinase 3-phosphataseENSG0000003965023


Protein motifs (from Interpro)
Interpro ID Name
 IPR000253  Forkhead-associated (FHA) domain
 IPR008984  SMAD/FHA domain superfamily
 IPR011146  HIT-like domain
 IPR013087  Zinc finger C2H2-type
 IPR019808  Histidine triad, conserved site
 IPR026963  Aprataxin
 IPR032566  Aprataxin, C2HE/C2H2/C2HC zinc finger
 IPR036265  HIT-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000012 single strand break repair IEA
 biological_processGO:0006266 DNA ligation IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IMP
 biological_processGO:0016311 dephosphorylation IEA
 biological_processGO:0031647 regulation of protein stability IMP
 biological_processGO:0042542 response to hydrogen peroxide IDA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 cellular_componentGO:0000785 chromatin IDA
 cellular_componentGO:0000790 nuclear chromatin IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0003684 damaged DNA binding IDA
 molecular_functionGO:0003690 double-stranded DNA binding IDA
 molecular_functionGO:0003725 double-stranded RNA binding IDA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008967 phosphoglycolate phosphatase activity IDA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0033699 DNA 5"-adenosine monophosphate hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0047485 protein N-terminus binding IPI
 molecular_functionGO:0051219 phosphoprotein binding IPI
 molecular_functionGO:0120108 DNA-3"-diphospho-5"-guanosine diphosphatase IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000571 Hypometric saccades 
Show

 HP:0000590 External ophthalmoplegia, progressive (PEO) 
Show

 HP:0000640 Gaze-evoked nystagmus "Nystagmus made apparent by looking to the right or to the left." [HPO:curators]
Show

 HP:0000657 Oculomotor apraxia 
Show

 HP:0000726 Dementia 
Show

 HP:0000764 Axonal degeneration 
Show

 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
Show

 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
Show

 HP:0001265 Hyporeflexia 
Show

 HP:0001266 Choreoathetosis 
Show

 HP:0001268 Mental deterioration 
Show

 HP:0001272 Cerebellar atrophy 
Show

 HP:0001284 Areflexia 
Show

 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
Show

 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
Show

 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
Show

 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
Show

 HP:0001761 Pes cavus 
Show

 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
Show

 HP:0002070 Limb ataxia 
Show

 HP:0002078 Truncal ataxia 
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002936 Distal sensory impairment 
Show

 HP:0003073 Hypoalbuminemia "Reduction in the concentration of albumin in the blood." [HPO:curators]
Show

 HP:0003124 Hypercholesterolemia 
Show

 HP:0003387 Loss of large myelinated fibers 
Show

 HP:0003581 Onset in adulthood 
Show

 HP:0003621 Juvenile onset 
Show

 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
Show

 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
Show

 HP:0010747 Medial flaring of the eyebrow "An abnormal distribution of eyebrow hair growth in the medial direction." [HPO:probinson]
Show

 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr