ENSGALG00000003429


Gallus gallus

Features
Gene ID: ENSGALG00000003429
  
Biological name :PBX1
  
Synonyms : PBX1 / PBX homeobox 1
  
Possible biological names infered from orthology : P40424 / P41778 / Pre-B-cell leukemia transcription factor 1
  
Species: Gallus gallus
  
Chr. number: 8
Strand: -1
Band:
Gene start: 5221120
Gene end: 5325617
  
Corresponding Affymetrix probe sets: Gga.3132.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000005416
Ensembl peptide - ENSGALP00000021849
NCBI entrez gene - 395505     See in Manteia.
RefSeq - XM_015290242
RefSeq - NM_204746
RefSeq - XM_015290241
RefSeq Peptide - NP_990077
swissprot - Q9IB15
swissprot - F1NQJ4
Ensembl - ENSGALG00000003429
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pbx1aENSDARG00000100494Danio rerio
 pbx1bENSDARG00000101131Danio rerio
 PBX1ENSG00000185630Homo sapiens
 Pbx1ENSMUSG00000052534Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PBX3 / pre-B-cell leukemia transcription factor 3 / O35317* / P40426* / PBX homeobox 3*ENSGALG0000000097285


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR005542  PBX
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001655 urogenital system development IEA
 biological_processGO:0001658 branching involved in ureteric bud morphogenesis IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0009887 animal organ morphogenesis IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0009954 proximal/distal pattern formation IEA
 biological_processGO:0010971 positive regulation of G2/M transition of mitotic cell cycle IEA
 biological_processGO:0030278 regulation of ossification IEA
 biological_processGO:0030325 adrenal gland development IEA
 biological_processGO:0030326 embryonic limb morphogenesis IEA
 biological_processGO:0035162 embryonic hemopoiesis IEA
 biological_processGO:0042127 regulation of cell proliferation IEA
 biological_processGO:0045665 negative regulation of neuron differentiation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048536 spleen development IEA
 biological_processGO:0048538 thymus development IEA
 biological_processGO:0048568 embryonic organ development IEA
 biological_processGO:0048706 embryonic skeletal system development IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0090575 RNA polymerase II transcription factor complex IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr