ENSGALG00000003799


Gallus gallus

Features
Gene ID: ENSGALG00000003799
  
Biological name :USP4
  
Synonyms : ubiquitin carboxyl-terminal hydrolase 4 / USP4
  
Possible biological names infered from orthology : P35123 / Q13107 / ubiquitin specific peptidase 4 / ubiquitin specific peptidase 4 (proto-oncogene)
  
Species: Gallus gallus
  
Chr. number: 12
Strand: -1
Band:
Gene start: 2791047
Gene end: 2820241
  
Corresponding Affymetrix probe sets: Gga.8418.1.S1_at (Chicken Array)   GgaAffx.12249.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000006016
NCBI entrez gene - 415937     See in Manteia.
RefSeq - NM_001006134
RefSeq Peptide - NP_001006134
swissprot - F1NE88
Ensembl - ENSGALG00000003799
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 usp4ENSDARG00000014770Danio rerio
 USP4ENSG00000114316Homo sapiens
 Usp4ENSMUSG00000032612Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
USP15 / ubiquitin carboxyl-terminal hydrolase 15 isoform 1 / Q8R5H1* / Q9Y4E8* / ubiquitin specific peptidase 15*ENSGALG0000003002454
USP6* / USP32* / P35125* / Q8NFA0* / ubiquitin specific peptidase 6* / ubiquitin specific peptidase 32*ENSGALG0000000535031
USP19 / ubiquitin specific peptidase 19 / O94966* / Q3UJD6*ENSGALG0000000682427
USP31 / ubiquitin specific peptidase 31 / Q70CQ4*ENSGALG0000000628621
USP43* / Q70EL4* / Q8BUM9* / ubiquitin specific peptidase 43*ENSGALG000000378129


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR006615  Peptidase C19, ubiquitin-specific peptidase, DUSP domain
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028134  Ubiquitin carboxyl-terminal hydrolase USP4
 IPR028135  Ubiquitin-like domain, USP-type
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000244 spliceosomal tri-snRNP complex assembly IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016579 protein deubiquitination IEA
 biological_processGO:0031397 negative regulation of protein ubiquitination IEA
 biological_processGO:0031647 regulation of protein stability IEA
 biological_processGO:0034394 protein localization to cell surface IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity IEA
 molecular_functionGO:0031685 adenosine receptor binding IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
TNFR1-induced proapoptotic signaling
Regulation of TNFR1 signaling
TNFR1-induced NFkappaB signaling pathway
Ub-specific processing proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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