ENSGALG00000004190


Gallus gallus

Features
Gene ID: ENSGALG00000004190
  
Biological name :RNF34
  
Synonyms : E3 ubiquitin-protein ligase RNF34 / RNF34
  
Possible biological names infered from orthology : Q969K3 / Q99KR6 / ring finger protein 34
  
Species: Gallus gallus
  
Chr. number: 15
Strand: 1
Band:
Gene start: 5506587
Gene end: 5514608
  
Corresponding Affymetrix probe sets: Gga.19467.1.S1_at (Chicken Array)   Gga.19467.1.S1_s_at (Chicken Array)   Gga.7925.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000006646
NCBI entrez gene - 416843     See in Manteia.
RefSeq - NM_001006188
RefSeq - XM_015275281
RefSeq - XM_015275282
RefSeq Peptide - NP_001006188
swissprot - F1P282
Ensembl - ENSGALG00000004190
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf34aENSDARG00000038300Danio rerio
 rnf34bENSDARG00000054036Danio rerio
 RNF34ENSG00000170633Homo sapiens
 Rnf34ENSMUSG00000029474Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RFFL / Q6ZQM0* / Q8WZ73* / AC004223.3* / E3 ubiquitin-protein ligase rififylin * / ring finger and FYVE like domain containing E3 ubiquitin protein ligase*ENSGALG0000000222548


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0035872 nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway IEA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0070417 cellular response to cold IEA
 biological_processGO:0070936 protein K48-linked ubiquitination IEA
 biological_processGO:1901797 negative regulation of signal transduction by p53 class mediator IEA
 biological_processGO:1902042 negative regulation of extrinsic apoptotic signaling pathway via death domain receptors IEA
 biological_processGO:2000374 regulation of oxygen metabolic process IEA
 biological_processGO:2001271 negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016604 nuclear body IEA
 molecular_functionGO:0002039 p53 binding IEA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA
 molecular_functionGO:1901981 phosphatidylinositol phosphate binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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