ENSGALG00000004583


Gallus gallus

Features
Gene ID: ENSGALG00000004583
  
Biological name :NPLOC4
  
Synonyms : NPL4 homolog, ubiquitin recognition factor / NPLOC4
  
Possible biological names infered from orthology : Nuclear protein localization / P60670 / Q8TAT6
  
Species: Gallus gallus
  
Chr. number: 18
Strand: 1
Band:
Gene start: 9239499
Gene end: 9268669
  
Corresponding Affymetrix probe sets: Gga.12539.1.S1_at (Chicken Array)   Gga.12539.2.S1_at (Chicken Array)   Gga.13586.1.S1_at (Chicken Array)   Gga.15641.1.S1_at (Chicken Array)   GgaAffx.2832.1.S1_at (Chicken Array)   GgaAffx.2832.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000007280
Ensembl peptide - ENSGALP00000064537
Ensembl peptide - ENSGALP00000059948
Ensembl peptide - ENSGALP00000058755
Ensembl peptide - ENSGALP00000045125
NCBI entrez gene - 417456     See in Manteia.
RefSeq - XM_015279926
RefSeq - XM_415704
swissprot - A0A1L1RME9
swissprot - E1BZJ3
swissprot - A0A1D5NXM7
swissprot - A0A1L1RJ29
swissprot - A0A1L1S080
Ensembl - ENSGALG00000004583
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nploc4ENSDARG00000100487Danio rerio
 NPLOC4ENSG00000182446Homo sapiens
 Nploc4ENSMUSG00000039703Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001876  Zinc finger, RanBP2-type
 IPR007716  NPL4, zinc-binding putative
 IPR007717  Nuclear pore localisation protein NPL4, C-terminal
 IPR016563  Nuclear protein localization protein 4
 IPR024682  Nuclear pore localisation protein Npl4, ubiquitin-like domain
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0030970 retrograde protein transport, ER to cytosol IEA
 biological_processGO:0032480 negative regulation of type I interferon production IEA
 biological_processGO:0039536 negative regulation of RIG-I signaling pathway IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0034098 VCP-NPL4-UFD1 AAA ATPase complex IEA
 cellular_componentGO:0036501 UFD1-NPL4 complex IEA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IBA
 molecular_functionGO:0043130 ubiquitin binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Translesion Synthesis by POLH


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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