ENSDARG00000100487


Danio rerio

Features
Gene ID: ENSDARG00000100487
  
Biological name :nploc4
  
Synonyms : NPL4 homolog, ubiquitin recognition factor / nploc4
  
Possible biological names infered from orthology : Nuclear protein localization / P60670 / Q8TAT6
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 35956245
Gene end: 35977702
  
Corresponding Affymetrix probe sets: Dr.10558.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000133068
NCBI entrez gene - 327447     See in Manteia.
swissprot - Q7ZVI8
ZFIN ID - ZDB-GENE-030131-5658
Ensembl - ENSDARG00000100487
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NPLOC4ENSGALG00000004583Gallus gallus
 NPLOC4ENSG00000182446Homo sapiens
 Nploc4ENSMUSG00000039703Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001876  Zinc finger, RanBP2-type
 IPR007716  NPL4, zinc-binding putative
 IPR007717  Nuclear pore localisation protein NPL4, C-terminal
 IPR016563  Nuclear protein localization protein 4
 IPR024682  Nuclear pore localisation protein Npl4, ubiquitin-like domain
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IBA
 molecular_functionGO:0043130 ubiquitin binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Translesion Synthesis by POLH


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000020008 vcp / Q7ZU99 / valosin containing protein / P55072* / Q01853*  / complex
 ENSDARG00000003938 rpa1 / Q6NY74 / replication protein A1 / Q8VEE4* / P27694* / Replication protein A 70 kDa DNA-binding subunit *  / complex / reaction
 ENSDARG00000037188 rpa2 / replication protein A2 / RPA4* / Q13156* / P15927* / replication protein A4*  / reaction / complex
 ENSDARG00000054155 pcna / Q9PTP1 / proliferating cell nuclear antigen / P17918* / P12004* / Pcna-ps2*  / complex / reaction
 ENSDARG00000070231 polh / polymerase (DNA directed), eta / Q9JJN0* / Q9Y253* / DNA polymerase eta*  / reaction / complex
 ENSDARG00000010051 ufd1l / ubiquitin recognition factor in ER associated degradation 1 / UFD1* / P70362* / Q92890*  / complex
 ENSDARG00000104709 sprtn / SprT-like N-terminal domain / Q9H040*  / reaction / complex






 

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