ENSDARG00000104709


Danio rerio

Features
Gene ID: ENSDARG00000104709
  
Biological name :sprtn
  
Synonyms : SprT-like N-terminal domain / sprtn
  
Possible biological names infered from orthology : G3X912 / Q9H040 / SprT-like domain-containing protein Spartan
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 4033193
Gene end: 4049862
  
Corresponding Affymetrix probe sets: Dr.18522.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000140734
NCBI entrez gene - 101886162     See in Manteia.
swissprot - A0A0G2L7I0
ZFIN ID - ZDB-GENE-170317-1
Ensembl - ENSDARG00000104709
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SPRTNENSGALG00000011065Gallus gallus
 SPRTNENSG00000010072Homo sapiens
 SprtnENSMUSG00000031986Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006640  SprT-like
 IPR006642  Zinc finger, Rad18-type putative


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IBA
 biological_processGO:0042769 DNA damage response, detection of DNA damage IMP
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0031593 polyubiquitin modification-dependent protein binding IBA


Pathways (from Reactome)
Pathway description
Translesion Synthesis by POLH


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism dead , abnormal
whole organism decreased life span , abnormal
Show

 ZFA:0001114 head head increased amount , abnormal
head increased distribution , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000003938 rpa1 / Q6NY74 / replication protein A1 / Q8VEE4* / P27694* / Replication protein A 70 kDa DNA-binding subunit *  / reaction / complex
 ENSDARG00000037188 rpa2 / replication protein A2 / RPA4* / Q13156* / P15927* / replication protein A4*  / reaction / complex
 ENSDARG00000054155 pcna / Q9PTP1 / proliferating cell nuclear antigen / P17918* / P12004* / Pcna-ps2*  / reaction / complex
 ENSDARG00000070231 polh / polymerase (DNA directed), eta / Q9JJN0* / Q9Y253* / DNA polymerase eta*  / complex / reaction
 ENSDARG00000020008 vcp / Q7ZU99 / valosin containing protein / P55072* / Q01853*  / reaction / complex
 ENSDARG00000010051 ufd1l / ubiquitin recognition factor in ER associated degradation 1 / UFD1* / P70362* / Q92890*  / reaction / complex
 ENSDARG00000100487 nploc4 / NPL4 homolog, ubiquitin recognition factor / Q8TAT6*  / complex / reaction






 

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