ENSDARG00000010051


Danio rerio

Features
Gene ID: ENSDARG00000010051
  
Biological name :ufd1l
  
Synonyms : ubiquitin recognition factor in ER associated degradation 1 / ufd1l
  
Possible biological names infered from orthology : P70362 / Q92890 / UFD1
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 4745340
Gene end: 4776395
  
Corresponding Affymetrix probe sets: Dr.3349.1.S1_at (Zebrafish Array)   NM_001002451_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000115288
Ensembl peptide - ENSDARP00000148570
Ensembl peptide - ENSDARP00000120767
Ensembl peptide - ENSDARP00000118492
Ensembl peptide - ENSDARP00000035108
NCBI entrez gene - 436724     See in Manteia.
RefSeq - NM_001002451
RefSeq Peptide - NP_001002451
swissprot - B0S614
swissprot - B0S613
swissprot - E9QIT9
swissprot - Q6DRD5
ZFIN ID - ZDB-GENE-040718-150
Ensembl - ENSDARG00000010051
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 UFD1LENSGALG00000001593Gallus gallus
 UFD1ENSG00000070010Homo sapiens
 Ufd1ENSMUSG00000005262Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004854  Ubiquitin fusion degradation protein Ufd1-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0071466 cellular response to xenobiotic stimulus IDA


Pathways (from Reactome)
Pathway description
Translesion Synthesis by POLH
Ub-specific processing proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000095 pharyngeal arch 3-7 skeleton pharyngeal arch 3-7 skeleton quality , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
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 ZFA:0000396 nervous system nervous system quality , abnormal
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 ZFA:0001114 head head shape , abnormal
head decreased size , abnormal
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 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton increased thickness , abnormal
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 ZFA:0001439 anatomical system anatomical system quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000020008 vcp / Q7ZU99 / valosin containing protein / P55072* / Q01853*  / complex
 ENSDARG00000003938 rpa1 / Q6NY74 / replication protein A1 / Q8VEE4* / P27694* / Replication protein A 70 kDa DNA-binding subunit *  / reaction / complex
 ENSDARG00000037188 rpa2 / replication protein A2 / RPA4* / Q13156* / P15927* / replication protein A4*  / complex / reaction
 ENSDARG00000079198 usp13 / F1QFS9 / ubiquitin specific peptidase 13 / Q92995* / Q5BKP2* / ubiquitin specific peptidase 13 (isopeptidase T-3)*  / complex / reaction
 ENSDARG00000054155 pcna / Q9PTP1 / proliferating cell nuclear antigen / P17918* / P12004* / Pcna-ps2*  / reaction / complex
 ENSDARG00000004937 skp2 / S-phase kinase-associated protein 2, E3 ubiquitin protein ligase / Q9Z0Z3* / Q13309* / S-phase kinase associated protein 2* / S-phase kinase-associated protein 2 (p45)*  / complex
 ENSDARG00000070231 polh / polymerase (DNA directed), eta / Q9JJN0* / Q9Y253* / DNA polymerase eta*  / complex / reaction
 ENSDARG00000100487 nploc4 / NPL4 homolog, ubiquitin recognition factor / Q8TAT6*  / complex
 ENSDARG00000104709 sprtn / SprT-like N-terminal domain / Q9H040*  / complex / reaction






 

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