ENSGALG00000005351


Gallus gallus

Features
Gene ID: ENSGALG00000005351
  
Biological name :PRDM6
  
Synonyms : PRDM6 / PR/SET domain 6
  
Possible biological names infered from orthology : Putative histone-lysine N-methyltransferase PRDM6 / Q3UZD5 / Q9NQX0
  
Species: Gallus gallus
  
Chr. number: Z
Strand: 1
Band:
Gene start: 81385308
Gene end: 81454168
  
Corresponding Affymetrix probe sets: GgaAffx.3351.1.S1_at (Chicken Array)   GgaAffx.3355.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000008574
NCBI entrez gene - 426800     See in Manteia.
RefSeq - XM_015280835
swissprot - F1NZV2
Ensembl - ENSGALG00000005351
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRDM6ENSG00000061455Homo sapiens
 Prdm6ENSMUSG00000069378Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PRDM12 / PR/SET domain 12 / A2AJ77* / Q9H4Q4* / PR domain zinc finger protein 12 *ENSGALG0000000389518
PRDM4 / PR/SET domain 4 / Q80V63* / Q9UKN5* / PR domain zinc finger protein 4 *ENSGALG0000001261917
ENSGALG0000003343915


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0022008 neurogenesis IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0051151 negative regulation of smooth muscle cell differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr