ENSGALG00000012619


Gallus gallus

Features
Gene ID: ENSGALG00000012619
  
Biological name :PRDM4
  
Synonyms : PRDM4 / PR/SET domain 4
  
Possible biological names infered from orthology : PR domain zinc finger protein 4 / Q80V63 / Q9UKN5
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 53375666
Gene end: 53392366
  
Corresponding Affymetrix probe sets: Gga.17604.1.S1_s_at (Chicken Array)   GgaAffx.23947.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000058153
Ensembl peptide - ENSGALP00000020571
NCBI entrez gene - 418065     See in Manteia.
RefSeq - XM_416301
RefSeq - XM_004937807
swissprot - F1NYH0
swissprot - A0A1D5PYU5
Ensembl - ENSGALG00000012619
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prdm4ENSDARG00000017366Danio rerio
 PRDM4ENSG00000110851Homo sapiens
 Prdm4ENSMUSG00000035529Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PRDM6 / PR/SET domain 6 / Q3UZD5* / Q9NQX0* / Putative histone-lysine N-methyltransferase PRDM6 *ENSGALG0000000535111
ENSGALG000000334399
PRDM12 / PR/SET domain 12 / A2AJ77* / Q9H4Q4* / PR domain zinc finger protein 12 *ENSGALG000000038959


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR013087  Zinc finger C2H2-type
 IPR017124  PR-domain zinc finger protein PRDM4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0035097 histone methyltransferase complex IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:1990226 histone methyltransferase binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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