ENSDARG00000017366


Danio rerio

Features
Gene ID: ENSDARG00000017366
  
Biological name :prdm4
  
Synonyms : prdm4 / PR domain containing 4
  
Possible biological names infered from orthology : PR domain zinc finger protein 4 / PR/SET domain 4 / Q80V63 / Q99LF4 / Q9UKN5 / Q9Y3I0 / RNA 2,3-cyclic phosphate and 5-OH ligase / RTCB / tRNA-splicing ligase RtcB homolog
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 14917502
Gene end: 14926637
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000118918
Ensembl peptide - ENSDARP00000099506
NCBI entrez gene - 100000537     See in Manteia.
RefSeq - NM_001122743
RefSeq Peptide - NP_001116215
swissprot - F1R3R6
swissprot - F1Q8L8
ZFIN ID - ZDB-GENE-041210-131
Ensembl - ENSDARG00000017366
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRDM4ENSGALG00000012619Gallus gallus
 PRDM4ENSG00000110851Homo sapiens
 RTCBENSG00000100220Homo sapiens
 Prdm4ENSMUSG00000035529Mus musculus
 RtcbENSMUSG00000001783Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
prdm14 / PR domain containing 14ENSDARG0000004537112
prdm12b / PR domain containing 12b / PRDM12* / Q9H4Q4* / PR/SET domain 12*ENSDARG000000074309


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR017124  PR-domain zinc finger protein PRDM4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:1990226 histone methyltransferase binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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