ENSDARG00000007430


Danio rerio

Features
Gene ID: ENSDARG00000007430
  
Biological name :prdm12b
  
Synonyms : prdm12b / PR domain containing 12b
  
Possible biological names infered from orthology : A2AJ77 / PRDM12 / PR domain zinc finger protein 12 / PR/SET domain 12 / Q9H4Q4
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 63509761
Gene end: 63515210
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000015394
NCBI entrez gene - 492816     See in Manteia.
swissprot - Q5U3V3
ZFIN ID - ZDB-GENE-041114-172
Ensembl - ENSDARG00000007430
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRDM12ENSGALG00000003895Gallus gallus
 PRDM12ENSG00000130711Homo sapiens
 A2AJ77ENSMUSG00000079466Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
prdm14 / PR domain containing 14ENSDARG0000004537126
prdm4 / PR domain containing 4 / RTCB* / Q99LF4* / Q80V63* / Q9UKN5* / Q9Y3I0* / PR/SET domain 4* / PR domain zinc finger protein 4 * / tRNA-splicing ligase RtcB homolog * / RNA 2,3-cyclic ...ENSDARG0000001736620


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR013087  Zinc finger C2H2-type
 IPR017126  PR-domain zinc finger protein PRDM12


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002244 hematopoietic progenitor cell differentiation IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0021521 ventral spinal cord interneuron specification IMP
 biological_processGO:0032259 methylation IEA
 biological_processGO:0060319 primitive erythrocyte differentiation IMP
 biological_processGO:1900111 positive regulation of histone H3-K9 dimethylation IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000029 hindbrain hindbrain has fewer parts of type oligodendrocyte , abnormal
hindbrain has fewer parts of type glioblast (sensu Vertebrata) , abnormal
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 ZFA:0000075 spinal cord spinal cord lacks all parts of type CiA , abnormal
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 ZFA:0000206 facial nerve motor nucleus facial nerve motor nucleus motor neuron mislocalised , abnormal
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 ZFA:0000713 abducens motor nucleus abducens motor nucleus has fewer parts of type abducens motor nucleus motor neuron, abnormal
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 ZFA:0005209 hindbrain interneuron hindbrain interneuron neuron fate specification process quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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