ENSG00000130711


Homo sapiens

Features
Gene ID: ENSG00000130711
  
Biological name :PRDM12
  
Synonyms : PRDM12 / PR/SET domain 12 / Q9H4Q4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: 1
Band: q34.12
Gene start: 130664594
Gene end: 130682981
  
Corresponding Affymetrix probe sets: 220894_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000253008
NCBI entrez gene - 59335     See in Manteia.
OMIM - 616458
RefSeq - NM_021619
RefSeq Peptide - NP_067632
swissprot - Q9H4Q4
Ensembl - ENSG00000130711
  
Related genetic diseases (OMIM): 616488 - Neuropathy, hereditary sensory and autonomic, type VIII, 616488
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prdm12bENSDARG00000007430Danio rerio
 PRDM12ENSGALG00000003895Gallus gallus
 A2AJ77ENSMUSG00000079466Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PRDM14 / Q9GZV8 / PR/SET domain 14ENSG0000014759628
PRDM6 / Q9NQX0 / PR/SET domain 6ENSG0000006145528
PRDM4 / Q9UKN5 / PR/SET domain 4ENSG0000011085123
RTCB / Q9Y3I0 / RNA 2,3-cyclic phosphate and 5-OH ligaseENSG000001002208


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR013087  Zinc finger C2H2-type
 IPR017126  PR-domain zinc finger protein PRDM12
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0019233 sensory perception of pain IMP
 biological_processGO:0022008 neurogenesis IEA
 biological_processGO:0031175 neuron projection development IMP
 biological_processGO:0032259 methylation IEA
 biological_processGO:0050965 detection of temperature stimulus involved in sensory perception of pain IMP
 biological_processGO:0051574 positive regulation of histone H3-K9 methylation IDA
 biological_processGO:1900111 positive regulation of histone H3-K9 dimethylation IMP
 cellular_componentGO:0005634 nucleus IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISM
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:1990226 histone methyltransferase binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000559 Corneal scarring 
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 HP:0000966 Hypohidrosis "Abnormally diminished capacity to sweat." [HPO:curators]
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 HP:0012804 Corneal ulceration "Disruption of the epithelial layer of the cornea with involvement of the underlying stroma." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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