ENSGALG00000005558


Gallus gallus

Features
Gene ID: ENSGALG00000005558
  
Biological name :TBL3
  
Synonyms : TBL3 / transducin beta-like protein 3
  
Possible biological names infered from orthology : Q12788 / Q8C4J7 / transducin beta like 3
  
Species: Gallus gallus
  
Chr. number: 14
Strand: 1
Band:
Gene start: 6182947
Gene end: 6193181
  
Corresponding Affymetrix probe sets: Gga.13178.1.S1_at (Chicken Array)   GgaAffx.11554.1.S1_at (Chicken Array)   GgaAffx.11554.1.S1_s_at (Chicken Array)   GgaAffx.3490.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000008904
NCBI entrez gene - 416545     See in Manteia.
RefSeq - NM_001006166
RefSeq Peptide - NP_001006166
swissprot - F1NM37
Ensembl - ENSGALG00000005558
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tbl3ENSDARG00000052344Danio rerio
 TBL3ENSG00000183751Homo sapiens
 Tbl3ENSMUSG00000040688Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SMU1 / Q5ZME8 / WD40 repeat-containing protein SMU1 / Q3UKJ7* / Q2TAY7* / SMU1, DNA replication regulator and spliceosomal factor* / WD40 repeat-containing protein SMU1 WD40 repeat-contain...ENSGALG0000000201413


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR013934  Small-subunit processome, Utp13
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006364 rRNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0032040 small-subunit processome IBA
 cellular_componentGO:0034388 Pwp2p-containing subcomplex of 90S preribosome IBA
 molecular_functionGO:0030515 snoRNA binding IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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