ENSGALG00000002014


Gallus gallus

Features
Gene ID: ENSGALG00000002014
  
Biological name :SMU1
  
Synonyms : Q5ZME8 / SMU1 / WD40 repeat-containing protein SMU1
  
Possible biological names infered from orthology : Q2TAY7 / Q3UKJ7 / SMU1, DNA replication regulator and spliceosomal factor / WD40 repeat-containing protein SMU1 WD40 repeat-containing protein SMU1, N-terminally processed
  
Species: Gallus gallus
  
Chr. number: Z
Strand: -1
Band:
Gene start: 70606361
Gene end: 70617581
  
Corresponding Affymetrix probe sets: Gga.5532.1.S1_at (Chicken Array)   GgaAffx.11539.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000063136
Ensembl peptide - ENSGALP00000003130
NCBI entrez gene - 427377     See in Manteia.
RefSeq - NM_001007979
RefSeq Peptide - NP_001007980
swissprot - Q5ZME8
swissprot - A0A1L1RWC5
Ensembl - ENSGALG00000002014
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smu1aENSDARG00000002538Danio rerio
 smu1bENSDARG00000051970Danio rerio
 SMU1ENSG00000122692Homo sapiens
 Smu1ENSMUSG00000028409Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TBL3 / transducin beta-like protein 3 / Q12788* / Q8C4J7* / transducin beta like 3*ENSGALG0000000555820


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR006594  LIS1 homology motif
 IPR006595  CTLH, C-terminal LisH motif
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome ISS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016607 nuclear speck ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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