ENSDARG00000051970


Danio rerio

Features
Gene ID: ENSDARG00000051970
  
Biological name :smu1b
  
Synonyms : smu1b / SMU1, DNA replication regulator and spliceosomal factor b
  
Possible biological names infered from orthology : Q2TAY7 / Q3UKJ7 / SMU1 / SMU1, DNA replication regulator and spliceosomal factor / WD40 repeat-containing protein SMU1 WD40 repeat-containing protein SMU1, N-terminally processed
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 45012391
Gene end: 45042210
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000068184
Ensembl peptide - ENSDARP00000147101
Ensembl peptide - ENSDARP00000148474
NCBI entrez gene - 570074     See in Manteia.
swissprot - A0A0R4ICN3
swissprot - E7FFQ0
ZFIN ID - ZDB-GENE-130530-635
Ensembl - ENSDARG00000051970
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMU1ENSGALG00000002014Gallus gallus
 SMU1ENSG00000122692Homo sapiens
 Smu1ENSMUSG00000028409Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smu1a / SMU1, DNA replication regulator and spliceosomal factor a / SMU1* / Q3UKJ7* / Q2TAY7* / SMU1, DNA replication regulator and spliceosomal factor* / WD40 repeat-containing protein SMU...ENSDARG0000000253874
tbl3 / transducin (beta)-like 3 / Q12788* / Q8C4J7* / Transducin beta-like protein 3 *ENSDARG0000005234418


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR006594  LIS1 homology motif
 IPR006595  CTLH, C-terminal LisH motif
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr