ENSMUSG00000028409


Mus musculus

Features
Gene ID: ENSMUSG00000028409
  
Biological name :Smu1
  
Synonyms : Q3UKJ7 / Smu1 / WD40 repeat-containing protein SMU1 WD40 repeat-containing protein SMU1, N-terminally processed
  
Possible biological names infered from orthology : Q2TAY7 / SMU1, DNA replication regulator and spliceosomal factor
  
Species: Mus musculus
  
Chr. number: 4
Strand: -1
Band: A5
Gene start: 40736542
Gene end: 40757923
  
Corresponding Affymetrix probe sets: 10512111 (MoGene1.0st)   1422442_at (Mouse Genome 430 2.0 Array)   1432042_a_at (Mouse Genome 430 2.0 Array)   1432043_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000030117
NCBI entrez gene - 74255     See in Manteia.
MGI - MGI:1915546
RefSeq - NM_021535
RefSeq Peptide - NP_067510
swissprot - Q3UKJ7
Ensembl - ENSMUSG00000028409
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smu1aENSDARG00000002538Danio rerio
 smu1bENSDARG00000051970Danio rerio
 SMU1ENSGALG00000002014Gallus gallus
 SMU1ENSG00000122692Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Tbl3 / Q8C4J7 / Transducin beta-like protein 3 / Q12788* / transducin beta like 3*ENSMUSG0000004068819


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR006594  LIS1 homology motif
 IPR006595  CTLH, C-terminal LisH motif
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome ISS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016607 nuclear speck ISS
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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