ENSDARG00000002538


Danio rerio

Features
Gene ID: ENSDARG00000002538
  
Biological name :smu1a
  
Synonyms : smu1a / SMU1, DNA replication regulator and spliceosomal factor a
  
Possible biological names infered from orthology : Q2TAY7 / Q3UKJ7 / SMU1 / SMU1, DNA replication regulator and spliceosomal factor / WD40 repeat-containing protein SMU1 WD40 repeat-containing protein SMU1, N-terminally processed
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 6228996
Gene end: 6245748
  
Corresponding Affymetrix probe sets: Dr.5094.1.S1_at (Zebrafish Array)   NM_200199_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000089117
NCBI entrez gene - 393168     See in Manteia.
RefSeq - NM_200199
RefSeq Peptide - NP_956493
swissprot - F1QKC0
ZFIN ID - ZDB-GENE-040426-916
Ensembl - ENSDARG00000002538
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMU1ENSGALG00000002014Gallus gallus
 SMU1ENSG00000122692Homo sapiens
 Smu1ENSMUSG00000028409Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smu1b / SMU1, DNA replication regulator and spliceosomal factor b / SMU1* / Q3UKJ7* / Q2TAY7* / SMU1, DNA replication regulator and spliceosomal factor* / WD40 repeat-containing protein SMU...ENSDARG0000005197078
tbl3 / transducin (beta)-like 3 / Q12788* / Q8C4J7* / Transducin beta-like protein 3 *ENSDARG0000005234420


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR006594  LIS1 homology motif
 IPR006595  CTLH, C-terminal LisH motif
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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