ENSGALG00000005707


Gallus gallus

Features
Gene ID: ENSGALG00000005707
  
Biological name :IFT20
  
Synonyms : IFT20 / intraflagellar transport 20
  
Possible biological names infered from orthology : Intraflagellar transport / Q61025 / Q8IY31
  
Species: Gallus gallus
  
Chr. number: 19
Strand: -1
Band:
Gene start: 9325242
Gene end: 9327381
  
Corresponding Affymetrix probe sets: Gga.11626.1.S1_at (Chicken Array)   Gga.5338.1.S1_at (Chicken Array)   Gga.5338.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000009139
Ensembl peptide - ENSGALP00000062435
Ensembl peptide - ENSGALP00000059522
NCBI entrez gene - 417671     See in Manteia.
RefSeq - XM_015295867
RefSeq - XM_415917
swissprot - A0A1L1RUE2
swissprot - A0A1L1RL92
swissprot - F1N856
Ensembl - ENSGALG00000005707
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ift20ENSDARG00000040556Danio rerio
 IFT20ENSG00000109083Homo sapiens
 Ift20ENSMUSG00000001105Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR028172  Intraflagellar transport protein 20


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001736 establishment of planar polarity IEA
 biological_processGO:0001822 kidney development IEA
 biological_processGO:0007224 smoothened signaling pathway IEA
 biological_processGO:0008542 visual learning IEA
 biological_processGO:0022008 neurogenesis IEA
 biological_processGO:0034067 protein localization to Golgi apparatus IEA
 biological_processGO:0035845 photoreceptor cell outer segment organization IEA
 biological_processGO:0036372 opsin transport IEA
 biological_processGO:0042073 intraciliary transport IEA
 biological_processGO:0051642 centrosome localization IEA
 biological_processGO:0055007 cardiac muscle cell differentiation IEA
 biological_processGO:0060122 inner ear receptor cell stereocilium organization IEA
 biological_processGO:0060271 cilium assembly IEA
 biological_processGO:0060828 regulation of canonical Wnt signaling pathway IEA
 biological_processGO:0061351 neural precursor cell proliferation IEA
 biological_processGO:0061512 protein localization to cilium IEA
 biological_processGO:0072659 protein localization to plasma membrane IEA
 biological_processGO:0090102 cochlea development IEA
 biological_processGO:1902017 regulation of cilium assembly IEA
 biological_processGO:2000785 regulation of autophagosome assembly IEA
 cellular_componentGO:0001750 photoreceptor outer segment IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005801 cis-Golgi network IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005814 centriole IEA
 cellular_componentGO:0005902 microvillus IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0030992 intraciliary transport particle B IEA
 cellular_componentGO:0031514 motile cilium IEA
 cellular_componentGO:0032391 photoreceptor connecting cilium IEA
 cellular_componentGO:0032420 stereocilium IEA
 cellular_componentGO:0036064 ciliary basal body IEA
 cellular_componentGO:0044292 dendrite terminus IEA
 cellular_componentGO:0097546 ciliary base IEA
 cellular_componentGO:1902636 kinociliary basal body IEA
 molecular_functionGO:0002046 opsin binding IEA
 molecular_functionGO:0017137 Rab GTPase binding IEA


Pathways (from Reactome)
Pathway description
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000006604 KIF3B / kinesin family member 3B / O15066* / Q61771* / Kinesin-like protein KIF3B Kinesin-like protein KIF3B, N-terminally processed*  / complex / reaction
 ENSGALG00000021047 KIFAP3 / kinesin associated protein 3 / P70188* / Q92845*  / complex / reaction
 ENSGALG00000026973 KIF3C / kinesin family member 3C / O14782* / O35066* / Kinesin-like protein KIF3C *  / reaction / complex
 ENSGALG00000010763 TRIP11 / thyroid hormone receptor interactor 11 / Q15643*  / complex






 

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