ENSDARG00000040556


Danio rerio

Features
Gene ID: ENSDARG00000040556
  
Biological name :ift20
  
Synonyms : ift20 / intraflagellar transport 20 homolog (Chlamydomonas)
  
Possible biological names infered from orthology : Intraflagellar transport / intraflagellar transport 20 / Q61025 / Q8IY31
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 23784842
Gene end: 23790172
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000145296
Ensembl peptide - ENSDARP00000147020
Ensembl peptide - ENSDARP00000121802
NCBI entrez gene - 414930     See in Manteia.
RefSeq - NM_001001833
RefSeq - XM_005157577
RefSeq Peptide - NP_001001833
swissprot - A0A0R4I9H0
ZFIN ID - ZDB-GENE-040614-2
Ensembl - ENSDARG00000040556
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 IFT20ENSGALG00000005707Gallus gallus
 IFT20ENSG00000109083Homo sapiens
 Ift20ENSMUSG00000001105Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR028172  Intraflagellar transport protein 20


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000051 otic vesicle otic vesicle cilium decreased amount , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000130 olfactory pit olfactory pit cilium decreased amount , abnormal
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 ZFA:0000150 pronephric duct pronephric duct cilium decreased amount , abnormal
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 ZFA:0000151 pronephros pronephros cystic , abnormal
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 ZFA:0001058 caudal fin caudal fin curved , abnormal
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 ZFA:0001117 post-vent region post-vent region curved ventral , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000017162 kif3ca / kinesin family member 3Ca / KIF3C* / O14782* / kinesin family member 3C*  / complex
 ENSDARG00000006862 kifap3b / kinesin-associated protein 3b / Q92845* / KIFAP3* / P70188* / kinesin associated protein 3*  / complex
 ENSDARG00000078381 trip11 / thyroid hormone receptor interactor 11 / Q15643*  / complex
 ENSDARG00000087538 kif3a / kinesin family member 3A / P28741* / Q9Y496* / Kinesin-like protein KIF3A *  / complex
 ENSDARG00000079500 kif3cb / kinesin family member 3Cb / KIF3C* / O14782* / O35066* / kinesin family member 3C* / Kinesin-like protein KIF3C *  / complex
 ENSDARG00000101120 kif3b / kinesin family member 3B / O15066* / Q61771* / Kinesin-like protein KIF3B Kinesin-like protein KIF3B, N-terminally processed*  / complex






 

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