ENSGALG00000006216


Gallus gallus

Features
Gene ID: ENSGALG00000006216
  
Biological name :MYOD1
  
Synonyms : myoblast determination protein 1 homolog / MYOD1
  
Possible biological names infered from orthology : Myoblast determination protein 1 / myogenic differentiation 1 / P10085 / P15172
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 12184436
Gene end: 12187655
  
Corresponding Affymetrix probe sets: Gga.750.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000062807
Ensembl peptide - ENSGALP00000038684
NCBI entrez gene - 374048     See in Manteia.
RefSeq - NM_204214
RefSeq Peptide - NP_989545
swissprot - F1NHM3
swissprot - A0A1L1RVE8
Ensembl - ENSGALG00000006216
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 myod1ENSDARG00000030110Danio rerio
 MYOD1ENSG00000129152Homo sapiens
 Myod1ENSMUSG00000009471Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MYF5 / myogenic factor 5 / P13349* / P24699*ENSGALG0000002809144
MYF6 / myogenic factor 6 / P15375* / P23409*ENSGALG0000001093633
MYOG / P17920 / Myogenin / P12979* / P15173*ENSGALG0000000017228


Protein motifs (from Interpro)
Interpro ID Name
 IPR002546  Myogenic basic muscle-specific protein
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR022032  Myogenic determination factor 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007517 muscle organ development IEA
 biological_processGO:0007518 myoblast fate determination IEA
 biological_processGO:0007519 skeletal muscle tissue development IEA
 biological_processGO:0007520 myoblast fusion IEA
 biological_processGO:0009267 cellular response to starvation IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0014902 myotube differentiation IEA
 biological_processGO:0014904 myotube cell development IEA
 biological_processGO:0014908 myotube differentiation involved in skeletal muscle regeneration IEA
 biological_processGO:0035914 skeletal muscle cell differentiation IEA
 biological_processGO:0043415 positive regulation of skeletal muscle tissue regeneration IEA
 biological_processGO:0043484 regulation of RNA splicing IEA
 biological_processGO:0043503 skeletal muscle fiber adaptation IEA
 biological_processGO:0043966 histone H3 acetylation IEA
 biological_processGO:0043967 histone H4 acetylation IEA
 biological_processGO:0045445 myoblast differentiation IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048741 skeletal muscle fiber development IEA
 biological_processGO:0051146 striated muscle cell differentiation IEA
 biological_processGO:0051149 positive regulation of muscle cell differentiation IEA
 biological_processGO:0071356 cellular response to tumor necrosis factor IEA
 biological_processGO:0071385 cellular response to glucocorticoid stimulus IEA
 biological_processGO:0071392 cellular response to estradiol stimulus IEA
 biological_processGO:0071453 cellular response to oxygen levels IEA
 biological_processGO:1901741 positive regulation of myoblast fusion IEA
 biological_processGO:2000818 negative regulation of myoblast proliferation IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016604 nuclear body IEA
 cellular_componentGO:0030016 myofibril IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001047 core promoter binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0031490 chromatin DNA binding IEA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IEA
 molecular_functionGO:0035257 nuclear hormone receptor binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
CDO in myogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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