ENSG00000129152


Homo sapiens

Features
Gene ID: ENSG00000129152
  
Biological name :MYOD1
  
Synonyms : MYOD1 / myogenic differentiation 1 / P15172
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: 1
Band: p15.1
Gene start: 17719568
Gene end: 17722131
  
Corresponding Affymetrix probe sets: 206657_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000250003
NCBI entrez gene - 4654     See in Manteia.
OMIM - 159970
RefSeq - NM_002478
RefSeq Peptide - NP_002469
swissprot - P15172
Ensembl - ENSG00000129152
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 myod1ENSDARG00000030110Danio rerio
 MYOD1ENSGALG00000006216Gallus gallus
 Myod1ENSMUSG00000009471Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MYF5 / P13349 / myogenic factor 5ENSG0000011104940
MYF6 / P23409 / myogenic factor 6ENSG0000011104630
MYOG / P15173 / myogeninENSG0000012218026


Protein motifs (from Interpro)
Interpro ID Name
 IPR002546  Myogenic basic muscle-specific protein
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR022032  Myogenic determination factor 5
 IPR036638  Helix-loop-helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006468 protein phosphorylation TAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007517 muscle organ development TAS
 biological_processGO:0007518 myoblast fate determination IEA
 biological_processGO:0007519 skeletal muscle tissue development IEA
 biological_processGO:0007520 myoblast fusion IEA
 biological_processGO:0009267 cellular response to starvation IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0014902 myotube differentiation IEA
 biological_processGO:0014904 myotube cell development IDA
 biological_processGO:0014908 myotube differentiation involved in skeletal muscle regeneration IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0035914 skeletal muscle cell differentiation IEA
 biological_processGO:0042693 muscle cell fate commitment ISS
 biological_processGO:0043415 positive regulation of skeletal muscle tissue regeneration IEA
 biological_processGO:0043484 regulation of RNA splicing IDA
 biological_processGO:0043503 skeletal muscle fiber adaptation IEA
 biological_processGO:0043966 histone H3 acetylation IEA
 biological_processGO:0043967 histone H4 acetylation IEA
 biological_processGO:0045445 myoblast differentiation IEA
 biological_processGO:0045663 positive regulation of myoblast differentiation IBA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048741 skeletal muscle fiber development IEA
 biological_processGO:0048743 positive regulation of skeletal muscle fiber development IBA
 biological_processGO:0051146 striated muscle cell differentiation IEA
 biological_processGO:0051149 positive regulation of muscle cell differentiation IDA
 biological_processGO:0071356 cellular response to tumor necrosis factor IEA
 biological_processGO:0071385 cellular response to glucocorticoid stimulus IEA
 biological_processGO:0071392 cellular response to estradiol stimulus IEA
 biological_processGO:0071453 cellular response to oxygen levels IEA
 biological_processGO:1901741 positive regulation of myoblast fusion IDA
 biological_processGO:2000818 negative regulation of myoblast proliferation IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0016604 nuclear body IDA
 cellular_componentGO:0030016 myofibril IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001047 core promoter binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding TAS
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0031490 chromatin DNA binding IEA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IEA
 molecular_functionGO:0035257 nuclear hormone receptor binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA
 molecular_functionGO:0046983 protein dimerization activity IEA
 molecular_functionGO:0070888 E-box binding ISS


Pathways (from Reactome)
Pathway description
CDO in myogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000476 Cystic hygroma of the neck "A cystic lymphatic lesion of the neck." [HPO:curators]
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 HP:0001059 Pterygia "Pterygia are winglike triangular membranes occurring in the neck, eyes, knees, elbows, ankles or digits." [HPO:curators]
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 HP:0001262 Somnolence 
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 HP:0001305 Dandy-Walker malformation "A congenital brain malformation typically characterized by incomplete formation of the cerebellar vermis, dilation of the fourth ventricle, and enlargement of the posterior fossa. In layman s terms, Dandy Walker malformation is a cyst in the cerebellum (typically symmetrical) that is involved with the fourth ventricle. This may interfere with the body s ability to drain cerebrospinal fluid from the brain, resulting in hydrocephalus. Dandy Walker cysts are formed during early embryonic development, while the brain forms. The cyst in the cerebellum typically has several blood vessels running through it connecting to the brain, thereby prohibiting surgical removal." [HPO:curators]
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001561 Polyhydramnios 
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 HP:0001989 Early severe fetal akinesia sequence 
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 HP:0002089 Pulmonary hypoplasia 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002304 Akinesia 
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 HP:0002375 Hypokinesia 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002804 Arthrogryposis multiplex congenita 
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 HP:0002828 Multiple joint contractures 
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 HP:0003700 Generalized amyotrophy "Generalized wasting of loss of muscle tissue." [HPO:curators]
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 HP:0005245 Hypoplastic intestines 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0010489 Aplasia of the palmar creases "Absence of the palmar creases." [HPO:curators]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000071564 TCF3 / P15923 / transcription factor 3  / reaction / complex
 ENSG00000081189 MEF2C / Q06413 / myocyte enhancer factor 2C  / reaction / complex
 ENSG00000068305 MEF2A / Q02078 / myocyte enhancer factor 2A  / complex / reaction






 

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