ENSG00000071564


Homo sapiens

Features
Gene ID: ENSG00000071564
  
Biological name :TCF3
  
Synonyms : P15923 / TCF3 / transcription factor 3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: -1
Band: p13.3
Gene start: 1609290
Gene end: 1652605
  
Corresponding Affymetrix probe sets: 202648_at (Human Genome U133 Plus 2.0 Array)   209151_x_at (Human Genome U133 Plus 2.0 Array)   209152_s_at (Human Genome U133 Plus 2.0 Array)   209153_s_at (Human Genome U133 Plus 2.0 Array)   210776_x_at (Human Genome U133 Plus 2.0 Array)   213730_x_at (Human Genome U133 Plus 2.0 Array)   213731_s_at (Human Genome U133 Plus 2.0 Array)   213732_at (Human Genome U133 Plus 2.0 Array)   213809_x_at (Human Genome U133 Plus 2.0 Array)   213811_x_at (Human Genome U133 Plus 2.0 Array)   215260_s_at (Human Genome U133 Plus 2.0 Array)   216645_at (Human Genome U133 Plus 2.0 Array)   216647_at (Human Genome U133 Plus 2.0 Array)   228052_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000468481
Ensembl peptide - ENSP00000467972
Ensembl peptide - ENSP00000468487
Ensembl peptide - ENSP00000480564
Ensembl peptide - ENSP00000262965
Ensembl peptide - ENSP00000344375
Ensembl peptide - ENSP00000378813
Ensembl peptide - ENSP00000396363
Ensembl peptide - ENSP00000465251
Ensembl peptide - ENSP00000465481
Ensembl peptide - ENSP00000465510
Ensembl peptide - ENSP00000465549
Ensembl peptide - ENSP00000466052
Ensembl peptide - ENSP00000466565
Ensembl peptide - ENSP00000466952
Ensembl peptide - ENSP00000466954
Ensembl peptide - ENSP00000467388
Ensembl peptide - ENSP00000467508
NCBI entrez gene - 6929     See in Manteia.
OMIM - 147141
RefSeq - XM_017027184
RefSeq - XM_011528215
RefSeq - XM_011528216
RefSeq - XM_011528217
RefSeq - XM_011528219
RefSeq - XM_011528220
RefSeq - XM_011528221
RefSeq - XM_011528223
RefSeq - XM_011528225
RefSeq - XM_011528226
RefSeq - XM_011528227
RefSeq - XM_017027177
RefSeq - XM_017027178
RefSeq - XM_017027179
RefSeq - XM_017027180
RefSeq - XM_017027181
RefSeq - XM_017027182
RefSeq - XM_017027183
RefSeq - NM_001136139
RefSeq - NM_001351779
RefSeq - NM_003200
RefSeq - XM_006722852
RefSeq - XM_006722853
RefSeq - XM_006722855
RefSeq - XM_006722856
RefSeq - XM_006722857
RefSeq - XM_006722858
RefSeq Peptide - NP_001129611
RefSeq Peptide - NP_001338708
RefSeq Peptide - NP_003191
swissprot - K7EKB9
swissprot - K7ELF3
swissprot - K7EMM4
swissprot - K7ENH8
swissprot - K7ENI0
swissprot - A0A0A0MTS0
swissprot - K7EPS2
swissprot - K7ERZ7
swissprot - P15923
swissprot - X6REB3
swissprot - A0A0A0MRB7
swissprot - K7EPH6
swissprot - K7EJN4
swissprot - K7EK65
Ensembl - ENSG00000071564
  
Related genetic diseases (OMIM): 616941 - Agammaglobulinemia 8, autosomal dominant, 616941

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tcf3aENSDARG00000005915Danio rerio
 tcf3bENSDARG00000099999Danio rerio
 TCF3ENSGALG00000001093Gallus gallus
 Tcf3ENSMUSG00000020167Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TCF4 / P15884 / transcription factor 4ENSG0000019662850
TCF12 / Q99081 / transcription factor 12ENSG0000014026250


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR036638  Helix-loop-helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0002326 B cell lineage commitment NAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated NAS
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030183 B cell differentiation NAS
 biological_processGO:0033152 immunoglobulin V(D)J recombination IDA
 biological_processGO:0045666 positive regulation of neuron differentiation ISS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated ISS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0051091 positive regulation of DNA-binding transcription factor activity IDA
 biological_processGO:0051149 positive regulation of muscle cell differentiation TAS
 biological_processGO:1902036 regulation of hematopoietic stem cell differentiation TAS
 cellular_componentGO:0000790 nuclear chromatin IDA
 cellular_componentGO:0005634 nucleus NAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005667 transcription factor complex IDA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0016607 nuclear speck IDA
 cellular_componentGO:0090575 RNA polymerase II transcription factor complex IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding NAS
 molecular_functionGO:0003700 DNA-binding transcription factor activity NAS
 molecular_functionGO:0003713 transcription coactivator activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0031435 mitogen-activated protein kinase kinase kinase binding IPI
 molecular_functionGO:0035326 enhancer binding IC
 molecular_functionGO:0042803 protein homodimerization activity IDA
 molecular_functionGO:0043425 bHLH transcription factor binding IPI
 molecular_functionGO:0046982 protein heterodimerization activity NAS
 molecular_functionGO:0046983 protein dimerization activity IEA
 molecular_functionGO:0070491 repressing transcription factor binding IPI
 molecular_functionGO:0070644 vitamin D response element binding IDA
 molecular_functionGO:0070888 E-box binding ISS


Pathways (from Reactome)
Pathway description
CDO in myogenesis
RUNX1 regulates transcription of genes involved in differentiation of HSCs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000246 Sinusitis 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000389 Chronic otitis media 
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 HP:0000403 Recurrent otitis media 
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 HP:0000509 Conjunctivitis "Inflammation of the conjunctiva." [HPO:curators]
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 HP:0000988 Skin rash 
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 HP:0001287 Meningitis 
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 HP:0001369 Arthritis 
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 HP:0001508 Failure to thrive 
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 HP:0001581 Recurrent skin infections "Infections of the skin that happen multiple times." [HPO:curators]
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 HP:0001875 Neutropenia 
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 HP:0001944 Dehydration 
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 HP:0001945 Fever 
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 HP:0002014 Diarrhea 
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 HP:0002024 Malabsorption 
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 HP:0002110 Bronchiectasis 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002721 Immunodeficiency 
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 HP:0002754 Osteomyelitis 
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 HP:0003593 Early onset 
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 HP:0004432 Agammaglobulinemia 
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 HP:0008572 External ear malformation 
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 HP:0010976 Reduction in B cell number "An abnormal decrease from the normal count of `B cells` (CL:0000236)." [HPO:probinson]
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 HP:0012115 Hepatitis "Inflammation of the liver." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012735 Cough "A sudden, audible expulsion of air from the lungs through a partially closed glottis, preceded by inhalation." [HPO:probinson]
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 HP:0100658 Cellulitis 
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 HP:0100806 Sepsis 
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 HP:0200043 verrucae "Benign growths on the skin or mucous membranes that cause cosmetic problems as well as pain and discomfort. Warts most often occur on the hands, feet, and genital areas." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000188130 MAPK12 / P53778 / mitogen-activated protein kinase 12  / reaction
 ENSG00000112062 MAPK14 / Q16539 / mitogen-activated protein kinase 14  / reaction
 ENSG00000129152 MYOD1 / P15172 / myogenic differentiation 1  / complex / reaction
 ENSG00000111049 MYF5 / P13349 / myogenic factor 5  / complex / reaction
 ENSG00000111046 MYF6 / P23409 / myogenic factor 6  / reaction / complex
 ENSG00000122180 MYOG / P15173 / myogenin  / complex / reaction
 ENSG00000081189 MEF2C / Q06413 / myocyte enhancer factor 2C  / complex / reaction
 ENSG00000068305 MEF2A / Q02078 / myocyte enhancer factor 2A  / complex / reaction
 ENSG00000185386 MAPK11 / Q15759 / mitogen-activated protein kinase 11  / reaction






 

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