ENSG00000140262


Homo sapiens

Features
Gene ID: ENSG00000140262
  
Biological name :TCF12
  
Synonyms : Q99081 / TCF12 / transcription factor 12
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: 1
Band: q21.3
Gene start: 56918623
Gene end: 57299281
  
Corresponding Affymetrix probe sets: 208986_at (Human Genome U133 Plus 2.0 Array)   215611_at (Human Genome U133 Plus 2.0 Array)   238041_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000453876
Ensembl peptide - ENSP00000453737
Ensembl peptide - ENSP00000454102
Ensembl peptide - ENSP00000456280
Ensembl peptide - ENSP00000454823
Ensembl peptide - ENSP00000454109
Ensembl peptide - ENSP00000267811
Ensembl peptide - ENSP00000331057
Ensembl peptide - ENSP00000342459
Ensembl peptide - ENSP00000388940
Ensembl peptide - ENSP00000440017
Ensembl peptide - ENSP00000444696
Ensembl peptide - ENSP00000453264
Ensembl peptide - ENSP00000453653
NCBI entrez gene - 6938     See in Manteia.
OMIM - 600480
RefSeq - XM_017022520
RefSeq - NM_001306219
RefSeq - NM_001306220
RefSeq - NM_001322151
RefSeq - NM_001322152
RefSeq - NM_001322154
RefSeq - NM_001322156
RefSeq - NM_001322157
RefSeq - NM_001322158
RefSeq - NM_001322159
RefSeq - NM_001322161
RefSeq - NM_001322162
RefSeq - NM_001322164
RefSeq - NM_001322165
RefSeq - NM_003205
RefSeq - NM_207036
RefSeq - NM_207037
RefSeq - NM_207038
RefSeq - NM_207040
RefSeq - XM_011521959
RefSeq - XM_011521960
RefSeq - XM_011521961
RefSeq - XM_011521962
RefSeq - XM_011521963
RefSeq - XM_011521965
RefSeq - XM_011521966
RefSeq - XM_011521967
RefSeq - XM_011521969
RefSeq Peptide - NP_001293148
RefSeq Peptide - NP_001293149
RefSeq Peptide - NP_001309087
RefSeq Peptide - NP_001309088
RefSeq Peptide - NP_001309090
RefSeq Peptide - NP_001309091
RefSeq Peptide - NP_001309093
RefSeq Peptide - NP_001309094
RefSeq Peptide - NP_003196
RefSeq Peptide - NP_996919
RefSeq Peptide - NP_996920
RefSeq Peptide - NP_996921
RefSeq Peptide - NP_996923
RefSeq Peptide - NP_001309080
RefSeq Peptide - NP_001309081
RefSeq Peptide - NP_001309083
RefSeq Peptide - NP_001309085
RefSeq Peptide - NP_001309086
swissprot - B4DZP2
swissprot - B4DGI9
swissprot - A0A024R5Z0
swissprot - F5GY10
swissprot - H0YML2
swissprot - H0YNP8
swissprot - H0YNQ5
swissprot - H3BNF4
swissprot - H3BRK2
swissprot - Q99081
swissprot - A0A024R5T1
Ensembl - ENSG00000140262
  
Related genetic diseases (OMIM): 615314 - Craniosynostosis 3, 615314

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tcf12ENSDARG00000004714Danio rerio
 TCF12ENSGALG00000004304Gallus gallus
 Tcf12ENSMUSG00000032228Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TCF4 / P15884 / transcription factor 4ENSG0000019662858
TCF3 / P15923 / transcription factor 3ENSG0000007156446


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR036638  Helix-loop-helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II TAS
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006955 immune response TAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007517 muscle organ development TAS
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0045666 positive regulation of neuron differentiation IBA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:1902036 regulation of hematopoietic stem cell differentiation TAS
 cellular_componentGO:0000790 nuclear chromatin IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0016607 nuclear speck IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0090575 RNA polymerase II transcription factor complex IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0035326 enhancer binding IC
 molecular_functionGO:0035497 cAMP response element binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IBA
 molecular_functionGO:0043425 bHLH transcription factor binding IPI
 molecular_functionGO:0044212 transcription regulatory region DNA binding IDA
 molecular_functionGO:0046332 SMAD binding IPI
 molecular_functionGO:0046982 protein heterodimerization activity IBA
 molecular_functionGO:0046983 protein dimerization activity IEA
 molecular_functionGO:0070888 E-box binding IEA
 molecular_functionGO:0071837 HMG box domain binding IEA


Pathways (from Reactome)
Pathway description
CDO in myogenesis
RUNX1 regulates transcription of genes involved in differentiation of HSCs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000294 Low frontal hairline "A condition in which the scalp hair is present at lower than usual areas of the forehead." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000324 Facial asymmetry 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000520 Proptosis 
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 HP:0000717 Autism 
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 HP:0000954 Transverse palmar creases "The presence of a single palmar crease (instead of the two palmar creases that are typically present)." [HPO:curators]
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 HP:0001123 Visual field defects 
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 HP:0001156 Brachydactyly 
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001357 Plagiocephaly "An asymmetric head shape often resulting from premature closure of only one of the coronal sutures." [HPO:curators]
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001822 Hallux valgus "Lateral deviation of the great toe (i.e., in the direction of the little toe)." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002516 Increased intracranial pressure 
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 HP:0009701 Synostosis involving the metacarpal bones "Fusion involving two or more metacarpal bones (A synostosis of the first metacarpal and the proximal phalanx of the thumb can also be observed, note that the first metacarpal bone corresponds to a proximal phalanx)." [HPO:curators]
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 HP:0009891 Hypoplasia of the supraorbital ridges "Underdevelopment of the supraorbital ridges." [HPO:curators]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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