ENSDARG00000004714


Danio rerio

Features
Gene ID: ENSDARG00000004714
  
Biological name :tcf12
  
Synonyms : tcf12 / transcription factor 12
  
Possible biological names infered from orthology : Q61286 / Q99081
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 52516706
Gene end: 52709935
  
Corresponding Affymetrix probe sets: Dr.10346.1.S1_at (Zebrafish Array)   Dr.12842.1.S1_at (Zebrafish Array)   Dr.25174.1.A1_at (Zebrafish Array)   Dr.25174.2.A1_at (Zebrafish Array)   NM_214816_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000068256
Ensembl peptide - ENSDARP00000143201
Ensembl peptide - ENSDARP00000143194
Ensembl peptide - ENSDARP00000143100
Ensembl peptide - ENSDARP00000143075
Ensembl peptide - ENSDARP00000143021
Ensembl peptide - ENSDARP00000143013
Ensembl peptide - ENSDARP00000132258
Ensembl peptide - ENSDARP00000123095
Ensembl peptide - ENSDARP00000119085
Ensembl peptide - ENSDARP00000114969
Ensembl peptide - ENSDARP00000004196
NCBI entrez gene - 407985     See in Manteia.
RefSeq - XM_009303439
RefSeq - NM_214816
RefSeq - XM_005166508
RefSeq - XM_005166511
RefSeq - XM_005166512
RefSeq - XM_009303435
RefSeq - XM_009303436
RefSeq - XM_009303438
RefSeq Peptide - NP_999981
swissprot - A0A0R4IBL7
swissprot - F1QNA6
swissprot - Q6NSM7
swissprot - E9QDJ6
swissprot - E9QDA6
swissprot - E9QBM6
swissprot - A0A1L1QZS2
swissprot - A0A1L1QZR8
swissprot - A0A1L1QZH9
swissprot - A0A1L1QZF4
swissprot - A0A1L1QZA0
swissprot - A0A1L1QZ94
ZFIN ID - ZDB-GENE-040516-11
Ensembl - ENSDARG00000004714
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TCF12ENSGALG00000004304Gallus gallus
 TCF12ENSG00000140262Homo sapiens
 Tcf12ENSMUSG00000032228Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TCF4 / transcription factor 4 / P15884*ENSDARG0000010740847
tcf3b / transcription factor 3b / TCF3* / P15923* / transcription factor 3*ENSDARG0000009999940
tcf3a / transcription factor 3a / TCF3* / P15923* / P15806* / transcription factor 3* / Transcription factor E2-alpha *ENSDARG0000000591533
CABZ01086139.1 / TCF4* / P15884* / transcription factor 4*ENSDARG000001133711


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045666 positive regulation of neuron differentiation IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005667 transcription factor complex IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0042803 protein homodimerization activity IBA
 molecular_functionGO:0043425 bHLH transcription factor binding IBA
 molecular_functionGO:0046982 protein heterodimerization activity IBA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
CDO in myogenesis
RUNX1 regulates transcription of genes involved in differentiation of HSCs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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