ENSDARG00000005915


Danio rerio

Features
Gene ID: ENSDARG00000005915
  
Biological name :tcf3a
  
Synonyms : tcf3a / transcription factor 3a
  
Possible biological names infered from orthology : P15806 / P15923 / TCF3 / transcription factor 3 / Transcription factor E2-alpha
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 57310523
Gene end: 57379216
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000010044
Ensembl peptide - ENSDARP00000124171
Ensembl peptide - ENSDARP00000124777
swissprot - F8W4Q7
swissprot - A0A286Y9R8
swissprot - F1R3L1
swissprot - F8W2C6
ZFIN ID - ZDB-GENE-990415-51
Ensembl - ENSDARG00000005915
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TCF3ENSGALG00000001093Gallus gallus
 TCF3ENSG00000071564Homo sapiens
 Tcf3ENSMUSG00000020167Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tcf3b / transcription factor 3b / TCF3* / P15923* / transcription factor 3*ENSDARG0000009999953
tcf12 / transcription factor 12 / Q61286* / Q99081*ENSDARG0000000471432
TCF4 / transcription factor 4 / P15884*ENSDARG0000010740831
CABZ01086139.1 / TCF4* / P15884* / transcription factor 4*ENSDARG000001133714


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045666 positive regulation of neuron differentiation IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 biological_processGO:0055002 striated muscle cell development IMP
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005667 transcription factor complex IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0042803 protein homodimerization activity IBA
 molecular_functionGO:0043425 bHLH transcription factor binding IBA
 molecular_functionGO:0043565 sequence-specific DNA binding IDA
 molecular_functionGO:0046982 protein heterodimerization activity IBA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
CDO in myogenesis
RUNX1 regulates transcription of genes involved in differentiation of HSCs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000155 somite somite morphology , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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