ENSDARG00000099999


Danio rerio

Features
Gene ID: ENSDARG00000099999
  
Biological name :tcf3b
  
Synonyms : tcf3b / transcription factor 3b
  
Possible biological names infered from orthology : P15806 / P15923 / TCF3 / transcription factor 3 / Transcription factor E2-alpha
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 20312180
Gene end: 20342260
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000135672
Ensembl peptide - ENSDARP00000135697
NCBI entrez gene - 664768     See in Manteia.
swissprot - B1H1L4
swissprot - Q32P37
ZFIN ID - ZDB-GENE-051113-64
Ensembl - ENSDARG00000099999
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TCF3ENSGALG00000001093Gallus gallus
 TCF3ENSG00000071564Homo sapiens
 Tcf3ENSMUSG00000020167Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tcf3a / transcription factor 3a / TCF3* / P15923* / P15806* / transcription factor 3* / Transcription factor E2-alpha *ENSDARG0000000591546
TCF4 / transcription factor 4 / P15884*ENSDARG0000010740838
tcf12 / transcription factor 12 / Q61286* / Q99081*ENSDARG0000000471434
CABZ01086139.1 / TCF4* / P15884* / transcription factor 4*ENSDARG000001133716


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045666 positive regulation of neuron differentiation IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005667 transcription factor complex IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0042803 protein homodimerization activity IBA
 molecular_functionGO:0043425 bHLH transcription factor binding IBA
 molecular_functionGO:0046982 protein heterodimerization activity IBA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
CDO in myogenesis
RUNX1 regulates transcription of genes involved in differentiation of HSCs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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