ENSGALG00000004304


Gallus gallus

Features
Gene ID: ENSGALG00000004304
  
Biological name :TCF12
  
Synonyms : TCF12 / transcription factor 12
  
Possible biological names infered from orthology : Q61286 / Q99081
  
Species: Gallus gallus
  
Chr. number: 10
Strand: -1
Band:
Gene start: 7176016
Gene end: 7516317
  
Corresponding Affymetrix probe sets: Gga.16528.1.S1_s_at (Chicken Array)   Gga.4007.1.S1_at (Chicken Array)   Gga.4007.3.S1_a_at (Chicken Array)   GgaAffx.11926.1.S1_s_at (Chicken Array)   GgaAffx.20882.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000061552
Ensembl peptide - ENSGALP00000006977
Ensembl peptide - ENSGALP00000033775
Ensembl peptide - ENSGALP00000059888
NCBI entrez gene - 396334     See in Manteia.
RefSeq - XM_015278773
RefSeq - XM_015278768
RefSeq - XM_015278769
RefSeq - XM_015278770
RefSeq - XM_015278771
RefSeq - XM_015278772
RefSeq - NM_205375
RefSeq - XM_015278764
RefSeq - XM_015278765
RefSeq - XM_015278766
RefSeq - XM_015278767
RefSeq Peptide - NP_990706
swissprot - F1NIE9
swissprot - F1NVE3
swissprot - A0A1L1RRW6
swissprot - Q5ZLB1
Ensembl - ENSGALG00000004304
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tcf12ENSDARG00000004714Danio rerio
 TCF12ENSG00000140262Homo sapiens
 Tcf12ENSMUSG00000032228Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TCF3 / transcription factor 3 / P15806* / P15923* / Transcription factor E2-alpha *ENSGALG0000000109343
TCF4* / P15884* / Q60722* / transcription factor 4*ENSGALG0000003377018


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0045666 positive regulation of neuron differentiation IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated ISS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005667 transcription factor complex ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0090575 RNA polymerase II transcription factor complex IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding ISS
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0043425 bHLH transcription factor binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA
 molecular_functionGO:0046332 SMAD binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA
 molecular_functionGO:0046983 protein dimerization activity IEA
 molecular_functionGO:0070888 E-box binding IEA


Pathways (from Reactome)
Pathway description
CDO in myogenesis
RUNX1 regulates transcription of genes involved in differentiation of HSCs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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