ENSGALG00000006672


Gallus gallus

Features
Gene ID: ENSGALG00000006672
  
Biological name :LARP4B
  
Synonyms : La ribonucleoprotein domain family member 4B / LARP4B
  
Possible biological names infered from orthology : La-related protein 4B / Q6A0A2 / Q92615
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 10303090
Gene end: 10352913
  
Corresponding Affymetrix probe sets: Gga.9486.1.S1_s_at (Chicken Array)   GgaAffx.22012.1.S1_at (Chicken Array)   GgaAffx.22012.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000046288
Ensembl peptide - ENSGALP00000010777
NCBI entrez gene - 420457     See in Manteia.
RefSeq - XM_015282135
RefSeq - XM_015282136
RefSeq - XM_015282137
RefSeq - XM_015282138
RefSeq - XM_015282139
RefSeq - XM_015282141
RefSeq - XM_015282133
RefSeq - XM_015282134
swissprot - F1P1X0
Ensembl - ENSGALG00000006672
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 larp4bENSDARG00000062146Danio rerio
 LARP4BENSG00000107929Homo sapiens
 Larp4bENSMUSG00000033499Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LARP4 / la-related protein 4 / Q71RC2* / la-related protein 4 isoform 4 * / La ribonucleoprotein domain family member 4*ENSGALG0000004212233


Protein motifs (from Interpro)
Interpro ID Name
 IPR006630  La-type HTH domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045727 positive regulation of translation IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010494 cytoplasmic stress granule IEA
 cellular_componentGO:0042788 polysomal ribosome IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr