ENSGALG00000007549


Gallus gallus

Features
Gene ID: ENSGALG00000007549
  
Biological name :VAPB
  
Synonyms : VAPB / vesicle-associated membrane protein-associated protein B/C
  
Possible biological names infered from orthology : O95292 / VAMP associated protein B and C / vesicle-associated membrane protein, associated protein B and C
  
Species: Gallus gallus
  
Chr. number: 20
Strand: -1
Band:
Gene start: 11390472
Gene end: 11417405
  
Corresponding Affymetrix probe sets: GgaAffx.12544.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000062272
Ensembl peptide - ENSGALP00000012193
NCBI entrez gene - 419317     See in Manteia.
RefSeq - NM_001006296
RefSeq Peptide - NP_001006296
swissprot - F1NSW0
swissprot - A0A1L1RTX9
Ensembl - ENSGALG00000007549
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vapbENSDARG00000070435Danio rerio
 VAPBENSG00000124164Homo sapiens
 VapbENSMUSG00000054455Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ENSGALG0000003945560


Protein motifs (from Interpro)
Interpro ID Name
 IPR000535  Major sperm protein (MSP) domain
 IPR008962  PapD-like superfamily
 IPR016763  Vesicle-associated membrane-protein-associated protein
 IPR030226  Vesicle-associated membrane protein-associated protein B


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006874 cellular calcium ion homeostasis IEA
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IEA
 biological_processGO:0006987 obsolete activation of signaling protein activity involved in unfolded protein response IEA
 biological_processGO:0007029 endoplasmic reticulum organization IEA
 biological_processGO:0019048 modulation by virus of host morphology or physiology IEA
 biological_processGO:0030968 endoplasmic reticulum unfolded protein response IEA
 biological_processGO:0045070 positive regulation of viral genome replication IEA
 biological_processGO:0090114 COPII-coated vesicle budding IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0008017 microtubule binding IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0033149 FFAT motif binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0045296 cadherin binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA
 molecular_functionGO:0048487 beta-tubulin binding IEA


Pathways (from Reactome)
Pathway description
Sphingolipid de novo biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr