ENSGALG00000008022


Gallus gallus

Features
Gene ID: ENSGALG00000008022
  
Biological name :TAPBP
  
Synonyms : TAP binding protein / TAPBP
  
Possible biological names infered from orthology : O15533
  
Species: Gallus gallus
  
Chr. number: 16
Strand: 1
Band:
Gene start: 112185
Gene end: 115717
  
Corresponding Affymetrix probe sets: Gga.4412.1.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000000202
Ensembl peptide - ENSGALP00000057426
Ensembl peptide - ENSGALP00000040903
NCBI entrez gene - 417048     See in Manteia.
RefSeq - NM_001206611
RefSeq - NM_001034816
RefSeq Peptide - NP_001029988
RefSeq Peptide - NP_001193540
swissprot - R4GFU8
swissprot - A4F5B6
swissprot - A0A1D5PWT8
Ensembl - ENSGALG00000008022
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tapbp.1ENSDARG00000079402Danio rerio
 tapbp.2ENSDARG00000045011Danio rerio
 TAPBPENSG00000231925Homo sapiens
 TapbpENSMUSG00000024308Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TAPBPL / tapasin-related protein / Q8VD31* / Q9BX59* / TAP binding protein like*ENSGALG0000001442823


Protein motifs (from Interpro)
Interpro ID Name
 IPR003006  Immunoglobulin/major histocompatibility complex, conserved site
 IPR003597  Immunoglobulin C1-set
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR008056  Tapasin
 IPR013106  Immunoglobulin V-set domain
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0019885 antigen processing and presentation of endogenous peptide antigen via MHC class I IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
ER-Phagosome pathway
Antigen Presentation: Folding, assembly and peptide loading of class I MHC


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000029381 TAP2 / Q03519* / P36371* / AL669918.1* / transporter 2, ATP binding cassette subfamily B member* / transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)*  / reaction
 ENSGALG00000039704 Q5ZJW4 / SEC22B / Vesicle-trafficking protein SEC22b / O08547* / O75396* / SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)*  / reaction






 

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© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr