ENSDARG00000079402


Danio rerio

Features
Gene ID: ENSDARG00000079402
  
Biological name :tapbp.1
  
Synonyms : TAP binding protein (tapasin), tandem duplicate 1 / tapbp.1
  
Possible biological names infered from orthology : O15533 / TAP binding protein / TAPBP
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 7038694
Gene end: 7043355
  
Corresponding Affymetrix probe sets: Dr.8062.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000095615
NCBI entrez gene - 30163     See in Manteia.
RefSeq - XM_005159471
swissprot - Q1LUU3
ZFIN ID - ZDB-GENE-010110-2
Ensembl - ENSDARG00000079402
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TAPBPENSGALG00000008022Gallus gallus
 TAPBPENSG00000231925Homo sapiens
 TapbpENSMUSG00000024308Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tapbp.2 / TAP binding protein (tapasin), tandem duplicate 2 / TAPBP* / O15533* / TAP binding protein*ENSDARG0000004501190
dhrs13b / dehydrogenase/reductase (SDR family) member 13bENSDARG0000009701919
tapbpl / TAP binding protein (tapasin)-like / Q9BX59* / Q8VD31* / Tapasin-related protein * / TAP binding protein like*ENSDARG0000005835118
zgc:198241ENSDARG0000007648318


Protein motifs (from Interpro)
Interpro ID Name
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR008056  Tapasin
 IPR013106  Immunoglobulin V-set domain
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0019885 antigen processing and presentation of endogenous peptide antigen via MHC class I IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
ER-Phagosome pathway
Antigen Presentation: Folding, assembly and peptide loading of class I MHC


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000033446 tap2t / transporter associated with antigen processing, subunit type t, teleost specific / TAP2* / Q03519* / P36371* / AL669918.1* / transporter 2, ATP binding cassette subfamily B member* ...  / reaction
 ENSDARG00000076290 calr / calreticulin / P14211* / P27797*  / reaction
 ENSDARG00000100435 Q7SXP0 / sec22bb / SEC22 homolog B, vesicle trafficking protein b / SEC22B* / O08547* / O75396* / Vesicle-trafficking protein SEC22b * / SEC22 homolog B, vesicle trafficking protein (gene/p...  / reaction
 ENSDARG00000079766 tap1 / transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) / P21958* / Q03518* / transporter 1, ATP binding cassette subfamily B member*  / reaction






 

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