ENSDARG00000076290


Danio rerio

Features
Gene ID: ENSDARG00000076290
  
Biological name :calr
  
Synonyms : calr / calreticulin
  
Possible biological names infered from orthology : P14211 / P27797
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 16582339
Gene end: 16592491
  
Corresponding Affymetrix probe sets: Dr.11394.1.S1_at (Zebrafish Array)   Dr.1809.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000092429
NCBI entrez gene - 325317     See in Manteia.
swissprot - F1Q8W8
ZFIN ID - ZDB-GENE-030131-4042
Ensembl - ENSDARG00000076290
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CALRENSGALG00000040368Gallus gallus
 CALRENSG00000179218Homo sapiens
 CalrENSMUSG00000003814Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
calr3b / calreticulin 3bENSDARG0000010280871
calr3a / calreticulin 3aENSDARG0000010397971
clgn / calmegin / O14967* / P52194* / Mus musculus calmegin (Clgn), transcript variant 2, mRNA.*ENSDARG0000000931543
canx / calnexin / P27824* / P35564*ENSDARG0000003748839
si:ch211-274f20.2ENSDARG0000005857922


Protein motifs (from Interpro)
Interpro ID Name
 IPR001580  Calreticulin/calnexin
 IPR009033  Calreticulin/calnexin, P domain superfamily
 IPR009169  Calreticulin
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR018124  Calreticulin/calnexin, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006457 protein folding IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0051082 unfolded protein binding IEA


Pathways (from Reactome)
Pathway description
ER-Phagosome pathway
Calnexin/calreticulin cycle
Antigen Presentation: Folding, assembly and peptide loading of class I MHC


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000033446 tap2t / transporter associated with antigen processing, subunit type t, teleost specific / TAP2* / Q03519* / P36371* / AL669918.1* / transporter 2, ATP binding cassette subfamily B member* ...  / reaction
 ENSDARG00000037488 canx / calnexin / P27824* / P35564*  / complex
 ENSDARG00000102640 pdia3 / protein disulfide isomerase family A, member 3 / P27773* / P30101* / Protein disulfide-isomerase A3 *  / complex / reaction
 ENSDARG00000079402 tapbp.1 / TAP binding protein (tapasin), tandem duplicate 1 / TAPBP* / O15533* / TAP binding protein*  / reaction
 ENSDARG00000079766 tap1 / transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) / P21958* / Q03518* / transporter 1, ATP binding cassette subfamily B member*  / reaction
 ENSDARG00000100435 Q7SXP0 / sec22bb / SEC22 homolog B, vesicle trafficking protein b / SEC22B* / O08547* / O75396* / Vesicle-trafficking protein SEC22b * / SEC22 homolog B, vesicle trafficking protein (gene/p...  / reaction
 ENSDARG00000045011 tapbp.2 / TAP binding protein (tapasin), tandem duplicate 2 / TAPBP* / O15533* / TAP binding protein*  / reaction






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr