ENSDARG00000102808


Danio rerio

Features
Gene ID: ENSDARG00000102808
  
Biological name :calr3b
  
Synonyms : calr3b / calreticulin 3b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 55783896
Gene end: 55797318
  
Corresponding Affymetrix probe sets: Dr.20067.1.S1_at (Zebrafish Array)   Dr.20067.2.A1_at (Zebrafish Array)   Dr.26414.1.S1_at (Zebrafish Array)   Dr.26414.1.S1_x_at (Zebrafish Array)   NM_201465_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000135281
NCBI entrez gene - 321315     See in Manteia.
RefSeq - NM_201465
RefSeq Peptide - NP_958873
swissprot - A0A0R4IL29
ZFIN ID - ZDB-GENE-030131-9907
Ensembl - ENSDARG00000102808
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
calr3a / calreticulin 3aENSDARG0000010397980
calr / calreticulin / P14211* / P27797*ENSDARG0000007629071
canx / calnexin / P27824* / P35564*ENSDARG0000003748841
clgn / calmegin / O14967* / P52194* / Mus musculus calmegin (Clgn), transcript variant 2, mRNA.*ENSDARG0000000931541
si:ch211-274f20.2ENSDARG0000005857921


Protein motifs (from Interpro)
Interpro ID Name
 IPR001580  Calreticulin/calnexin
 IPR009033  Calreticulin/calnexin, P domain superfamily
 IPR009169  Calreticulin
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR018124  Calreticulin/calnexin, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006457 protein folding IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0051082 unfolded protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr