ENSDARG00000009315


Danio rerio

Features
Gene ID: ENSDARG00000009315
  
Biological name :clgn
  
Synonyms : calmegin / clgn
  
Possible biological names infered from orthology : Mus musculus calmegin (Clgn), transcript variant 2, mRNA. / O14967 / P52194
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 40572757
Gene end: 40608392
  
Corresponding Affymetrix probe sets: Dr.10572.1.A1_at (Zebrafish Array)   NM_001077541_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000092445
NCBI entrez gene - 556495     See in Manteia.
RefSeq - NM_001077541
RefSeq Peptide - NP_001071009
swissprot - Q08BY9
ZFIN ID - ZDB-GENE-060929-708
Ensembl - ENSDARG00000009315
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CLGNENSGALG00000009826Gallus gallus
 CLGNENSG00000153132Homo sapiens
 ClgnENSMUSG00000002190Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
canx / calnexin / P27824* / P35564*ENSDARG0000003748856
si:ch211-274f20.2ENSDARG0000005857929
calr / calreticulin / P14211* / P27797*ENSDARG0000007629029
calr3a / calreticulin 3aENSDARG0000010397927
calr3b / calreticulin 3bENSDARG0000010280827


Protein motifs (from Interpro)
Interpro ID Name
 IPR001580  Calreticulin/calnexin
 IPR009033  Calreticulin/calnexin, P domain superfamily
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR018124  Calreticulin/calnexin, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006457 protein folding IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0051082 unfolded protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr