ENSGALG00000008349


Gallus gallus

Features
Gene ID: ENSGALG00000008349
  
Biological name :LMCD1
  
Synonyms : LIM and cysteine rich domains 1 / LMCD1
  
Possible biological names infered from orthology : Q8VEE1 / Q9NZU5
  
Species: Gallus gallus
  
Chr. number: 12
Strand: 1
Band:
Gene start: 19267852
Gene end: 19288256
  
Corresponding Affymetrix probe sets: GgaAffx.5267.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000013575
Ensembl peptide - ENSGALP00000048334
NCBI entrez gene - 416113     See in Manteia.
RefSeq - XM_414443
RefSeq - XM_015293173
swissprot - E1BQR6
swissprot - A0A1D5P6K7
Ensembl - ENSGALG00000008349
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lmcd1ENSDARG00000002002Danio rerio
 LMCD1ENSG00000071282Homo sapiens
 Lmcd1ENSMUSG00000057604Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TES / Q90YH9 / Testin / Q9UGI8* / Gm4907* / Gm4985* / testin LIM domain protein* / testis derived transcript*ENSGALG0000003193451
PRICKLE1 / prickle planar cell polarity protein 1 / Q3U5C7* / Q96MT3* / Prickle-like protein 1 *ENSGALG0000000955628
PRICKLE2 / prickle planar cell polarity protein 2 / Q7Z3G6* / Q80Y24*ENSGALG0000000733228
Q2TBC4* / Gm21981* / PRICKLE4* / AL365205.1* / prickle planar cell polarity protein 4*ENSGALG0000002826220


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type
 IPR010442  PET domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0010611 regulation of cardiac muscle hypertrophy IEA
 biological_processGO:0070886 positive regulation of calcineurin-NFAT signaling cascade IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0003714 transcription corepressor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Surfactant metabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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