ENSMUSG00000057604


Mus musculus

Features
Gene ID: ENSMUSG00000057604
  
Biological name :Lmcd1
  
Synonyms : LIM and cysteine-rich domains 1 / Lmcd1 / Q8VEE1
  
Possible biological names infered from orthology : Q9NZU5
  
Species: Mus musculus
  
Chr. number: 6
Strand: 1
Band: E3
Gene start: 112273758
Gene end: 112330425
  
Corresponding Affymetrix probe sets: 10540523 (MoGene1.0st)   1424596_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000032376
NCBI entrez gene - 30937     See in Manteia.
MGI - MGI:1353635
RefSeq - NM_144799
RefSeq Peptide - NP_659048
swissprot - Q3TVW6
swissprot - Q8VEE1
Ensembl - ENSMUSG00000057604
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lmcd1ENSDARG00000002002Danio rerio
 LMCD1ENSGALG00000008349Gallus gallus
 LMCD1ENSG00000071282Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Tes / testis derived transcript / Q9UGI8* / testin LIM domain protein*ENSMUSG0000002955248
Gm4907 / TES* / Q9UGI8* / testin LIM domain protein*ENSMUSG0000006811345
Gm4985 / TES* / Q9UGI8* / testin LIM domain protein*ENSMUSG0000009010244
Q80Y24 / Prickle2 / prickle planar cell polarity protein 2 / Q7Z3G6*ENSMUSG0000003002032
Q80VL3 / Prickle3 / Prickle planar cell polarity protein 3 / O43900*ENSMUSG0000003114532
Q3U5C7 / Prickle1 / Prickle-like protein 1 / Q96MT3* / prickle planar cell polarity protein 1*ENSMUSG0000003615825
Prickle4 / prickle planar cell polarity protein 4 / Q2TBC4* / AL365205.1*ENSMUSG0000009654921
Gm21981 / Q2TBC4* / PRICKLE4* / AL365205.1* / prickle planar cell polarity protein 4*ENSMUSG0000007944421


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type
 IPR010442  PET domain
 IPR033724  PET testin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IGI
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0010611 regulation of cardiac muscle hypertrophy IMP
 biological_processGO:0070886 positive regulation of calcineurin-NFAT signaling cascade IMP
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0003714 transcription corepressor activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Surfactant metabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000005836 Gata6 / Q61169 / Transcription factor GATA-6 / Q92908* / GATA binding protein 6*  / reaction / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr