ENSG00000071282


Homo sapiens

Features
Gene ID: ENSG00000071282
  
Biological name :LMCD1
  
Synonyms : LIM and cysteine rich domains 1 / LMCD1 / Q9NZU5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: p25.3
Gene start: 8501707
Gene end: 8574673
  
Corresponding Affymetrix probe sets: 218574_s_at (Human Genome U133 Plus 2.0 Array)   220244_at (Human Genome U133 Plus 2.0 Array)   227317_at (Human Genome U133 Plus 2.0 Array)   240306_at (Human Genome U133 Plus 2.0 Array)   242767_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000400555
Ensembl peptide - ENSP00000396515
Ensembl peptide - ENSP00000405049
Ensembl peptide - ENSP00000411222
Ensembl peptide - ENSP00000157600
Ensembl peptide - ENSP00000380542
NCBI entrez gene - 29995     See in Manteia.
OMIM - 604859
RefSeq - XM_011533649
RefSeq - NM_001278233
RefSeq - NM_001278234
RefSeq - NM_001278235
RefSeq - NM_014583
RefSeq Peptide - NP_001265164
RefSeq Peptide - NP_001265162
RefSeq Peptide - NP_001265163
RefSeq Peptide - NP_055398
swissprot - H7C3D2
swissprot - C9IYS1
swissprot - Q9NZU5
swissprot - B4DEY6
swissprot - F8WB09
Ensembl - ENSG00000071282
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lmcd1ENSDARG00000002002Danio rerio
 LMCD1ENSGALG00000008349Gallus gallus
 Lmcd1ENSMUSG00000057604Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TES / Q9UGI8 / testin LIM domain proteinENSG0000013526948
O43900 / PRICKLE3 / prickle planar cell polarity protein 3ENSG0000001221132
Q7Z3G6 / PRICKLE2 / prickle planar cell polarity protein 2ENSG0000016363728
Q96MT3 / PRICKLE1 / prickle planar cell polarity protein 1ENSG0000013917427
AL365205.1ENSG0000012459321
Q2TBC4 / PRICKLE4 / prickle planar cell polarity protein 4ENSG0000027822421


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type
 IPR010442  PET domain
 IPR033724  PET testin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0010611 regulation of cardiac muscle hypertrophy IMP
 biological_processGO:0044267 cellular protein metabolic process TAS
 biological_processGO:0070886 positive regulation of calcineurin-NFAT signaling cascade IEA
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0031012 extracellular matrix IDA
 molecular_functionGO:0003714 transcription corepressor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Surfactant metabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000141448 GATA6 / Q92908 / GATA binding protein 6  / complex / reaction






 

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