ENSG00000141448


Homo sapiens

Features
Gene ID: ENSG00000141448
  
Biological name :GATA6
  
Synonyms : GATA6 / GATA binding protein 6 / Q92908
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 18
Strand: 1
Band: q11.2
Gene start: 22169443
Gene end: 22202528
  
Corresponding Affymetrix probe sets: 210002_at (Human Genome U133 Plus 2.0 Array)   229282_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000462313
Ensembl peptide - ENSP00000269216
NCBI entrez gene - 2627     See in Manteia.
OMIM - 601656
RefSeq - NM_005257
RefSeq Peptide - NP_005248
swissprot - Q92908
Ensembl - ENSG00000141448
  
Related genetic diseases (OMIM): 614475 - Atrial septal defect 9, 614475
  614474 - Atrioventricular septal defect 5, 614474
  600001 - Pancreatic agenesis and congenital heart defects, 600001
  217095 - Persistent truncus arteriosus, 217095
  187500 - Tetralogy of Fallot, 187500

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gata6ENSDARG00000103589Danio rerio
 GATA6ENSGALG00000014976Gallus gallus
 Gata6ENSMUSG00000005836Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GATA4 / P43694 / GATA binding protein 4ENSG0000013657438
GATA5 / Q9BWX5 / GATA binding protein 5ENSG0000013070032
GATA2 / P23769 / GATA binding protein 2ENSG0000017934826
GATA3 / P23771 / GATA binding protein 3ENSG0000010748524
GATA1 / P15976 / GATA binding protein 1ENSG0000010214523
TRPS1 / Q9UHF7 / transcriptional repressor GATA binding 1ENSG0000010444721


Protein motifs (from Interpro)
Interpro ID Name
 IPR000679  Zinc finger, GATA-type
 IPR008013  GATA-type transcription activator, N-terminal
 IPR013088  Zinc finger, NHR/GATA-type
 IPR016375  Transcription factor GATA-4/5/6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0001889 liver development IEA
 biological_processGO:0003148 outflow tract septum morphogenesis IMP
 biological_processGO:0003309 type B pancreatic cell differentiation IEA
 biological_processGO:0003310 pancreatic A cell differentiation IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IDA
 biological_processGO:0006644 phospholipid metabolic process IEA
 biological_processGO:0007493 endodermal cell fate determination IEA
 biological_processGO:0007596 blood coagulation TAS
 biological_processGO:0008584 male gonad development IEP
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0014898 cardiac muscle hypertrophy in response to stress IEA
 biological_processGO:0030513 positive regulation of BMP signaling pathway IBA
 biological_processGO:0030855 epithelial cell differentiation IEA
 biological_processGO:0031016 pancreas development IEA
 biological_processGO:0032911 negative regulation of transforming growth factor beta1 production IMP
 biological_processGO:0032912 negative regulation of transforming growth factor beta2 production IMP
 biological_processGO:0035239 tube morphogenesis IEA
 biological_processGO:0035987 endodermal cell differentiation IEA
 biological_processGO:0042493 response to drug IMP
 biological_processGO:0043066 negative regulation of apoptotic process IMP
 biological_processGO:0043627 response to estrogen IEA
 biological_processGO:0044267 cellular protein metabolic process TAS
 biological_processGO:0045766 positive regulation of angiogenesis IDA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048645 animal organ formation IEA
 biological_processGO:0048738 cardiac muscle tissue development IEA
 biological_processGO:0051145 smooth muscle cell differentiation IMP
 biological_processGO:0051891 positive regulation of cardioblast differentiation IEA
 biological_processGO:0055007 cardiac muscle cell differentiation IEA
 biological_processGO:0060045 positive regulation of cardiac muscle cell proliferation IEA
 biological_processGO:0060430 lung saccule development IEA
 biological_processGO:0060486 Clara cell differentiation IEA
 biological_processGO:0060510 type II pneumocyte differentiation IEA
 biological_processGO:0060575 intestinal epithelial cell differentiation IDA
 biological_processGO:0060947 cardiac vascular smooth muscle cell differentiation IMP
 biological_processGO:0070848 response to growth factor IDA
 biological_processGO:0071158 positive regulation of cell cycle arrest IDA
 biological_processGO:0071371 cellular response to gonadotropin stimulus IEA
 biological_processGO:0071456 cellular response to hypoxia IDA
 biological_processGO:0071773 cellular response to BMP stimulus IEA
 biological_processGO:0110024 positive regulation of cardiac muscle myoblast proliferation IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005667 transcription factor complex IBA
 cellular_componentGO:0031965 nuclear membrane IDA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IMP
 molecular_functionGO:0001085 RNA polymerase II transcription factor binding IBA
 molecular_functionGO:0001103 RNA polymerase II repressing transcription factor binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0019901 protein kinase binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Surfactant metabolism
Factors involved in megakaryocyte development and platelet production


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000023 Inguinal hernia 
Show

 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
Show

 HP:0000073 Ureteral duplication "A developmental anomaly characterized by the presence of two, instead of one, ureter connecting a kidney to the bladder." [HPO:curators]
Show

 HP:0000233 Thin vermillion border 
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000268 Dolichocephaly 
Show

 HP:0000316 Hypertelorism 
Show

 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
Show

 HP:0000520 Proptosis 
Show

 HP:0000776 Diaphragmatic hernia "Diaphragmatic hernia is the result of a developmental defect causing an abnormal opening in the diaphragm, through which abdominal organs (stomach, spleen, liver, and intestines) can protrude into the thoracic cavity. This usually causes respiratory distress in the newborn period." [HPO:curators]
Show

 HP:0000819 Diabetes mellitus 
Show

 HP:0000851 Congenital hypothyroidism 
Show

 HP:0000857 Neonatal insulin-dependent diabetes mellitus 
Show

 HP:0000891 Cervical ribs 
Show

 HP:0000924 Abnormality of the musculoskeletal system "An abnormality of the musculoskeletal system including one or more abnormalities affecting bones, muscles, cartilage, tendons, ligaments, joints, and other connective tissue." [HPO:curators]
Show

 HP:0001156 Brachydactyly 
Show

 HP:0001195 Single umbilical artery 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
Show

 HP:0001508 Failure to thrive 
Show

 HP:0001511 Intrauterine growth retardation 
Show

 HP:0001518 Low birth weight 
Show

 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
Show

 HP:0001562 Oligohydramnios 
Show

 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
Show

 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
Show

 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
Show

 HP:0001642 Pulmonic stenosis "A narrowing of the right ventricular outflow tract that can occur at the pulmonary valve (valvular stenosis) or just below the pulmonary valve (infundibular stenosis). Infundibular pulmonic stenosis is mostly caused by overgrowth of the heart muscle wall (hypertrophy of the septoparietal trabeculae). Pulmonic stenosis is often seen as a part of Fallot s tetralogy, in which case the events leading to the formation of the overriding aorta are also believed to be a cause of the pulmonic stenosis. The pulmonic stenosis is the major cause of the malformations seen in patients with Fallot tetralogy, with the other associated malformations acting as compensatory mechanisms to the pulmonic stenosis. The degree of stenosis varies between individuals with TOF, and is the primary determinant of symptoms and severity. This malformation is infrequently described as sub-pulmonary stenosis or subpulmonary obstruction." [HPO:curators]
Show

 HP:0001643 Patent ductus arteriosus 
Show

 HP:0001655 Patent foramen ovale 
Show

 HP:0001660 Persistant truncus arteriosus "Persistent Truncus Arteriosus results from a failure of the truncus arteriosus to close." [HPO:curators]
Show

 HP:0001669 Transposition of the great vessels 
Show

 HP:0001674 Complete atrioventricular canal "A congenital malformation characterized by atrial septal defect, ventricular septal defect), and abnormalities of the tricuspid and mitral valves." [HPO:curators]
Show

 HP:0001680 Coarctation of aorta "Coarctation of the aorta is a narrowing or constriction of the aorta just distal to the origin of the left subclavian artery." [HPO:curators]
Show

 HP:0001684 Secundum atrial septal defect 
Show

 HP:0001719 Double outlet right ventricle 
Show

 HP:0001738 Exocrine pancreatic insufficiency 
Show

 HP:0001939 Metabolism abnormality 
Show

 HP:0002092 Pulmonary hypertension 
Show

 HP:0002098 Respiratory distress 
Show

 HP:0002254 Intermittent diarrhea 
Show

 HP:0002566 Intestinal malrotation "An abnormality of the intestinal rotation and fixation that normally occurs during the development of the gut. This can lead to volvulus, or twisting of the intestine that causes obstruction and necrosis." [HPO:curators]
Show

 HP:0002594 Pancreatic hypoplasia 
Show

 HP:0003074 Hyperglycemia 
Show

 HP:0003076 Glycosuria "The excretion of abnormal amounts of glucose in the urine, generally resulting in osmotic diuresis." [HPO:curators]
Show

 HP:0003645 Prolonged partial thromboplastin time 
Show

 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
Show

 HP:0004388 Microcolon 
Show

 HP:0004415 Pulmonary artery stenosis 
Show

 HP:0004467 Preauricular sinus "The preauricular sinus is a benign congenital lesion of the preauricular soft tissue consisting of a blind-ending narrow tube or pit. It is also known as preauricular pit, preauricular fistula, preauricular tract and preauricular cyst. It can be asymptomatic or present as an infected and discharging sinus. It presents as a small pit adjacent to the external ear usually located at the anterior margin of the ascending limb of the helix." [HPO:curators]
Show

 HP:0004762 Hypoplasia of right ventricle 
Show

 HP:0005105 Abnormal nasal morphology 
Show

 HP:0005912 Biliary duct atresia 
Show

 HP:0006695 Tricuspid and mitral valves are replaced by a single inlet valve 
Show

 HP:0009891 Hypoplasia of the supraorbital ridges "Underdevelopment of the supraorbital ridges." [HPO:curators]
Show

 HP:0010055 Broad hallux 
Show

 HP:0010626 Aplasia of the pituitary gland "Absence of the pituitary gland." [HPO:curators]
Show

 HP:0011466 Aplasia/Hypoplasia of the gallbladder "Absence or underdevelopment of the gallbladder." [HPO:probinson]
Show

 HP:0011573 Hypoplastic tricuspid valve "Congenital defect characterized by underdevelopment of the tricuspid valve." [DDD:dbrown]
Show

 HP:0011581 Double outlet left ventricle "A congenital defect of heart development characterized by origin of both pulmonary artery and aorta from the morphological left ventricle." [HPO:probinson]
Show

 HP:0011611 Interrupted aortic arch "Non-continuity of the aortic arch with an atretic point or absent segment." [DDD:dbrown]
Show

 HP:0011623 Muscular ventricular septal defect "The trabecular septum is the largest part of the interventricular septum. It extends from the membranous septum to the apex and superiorly to the infundibular septum. A defect in the trabecular septum is called muscular VSD if the defect is completely rimmed by muscle." [DDD:dbrown, pmid:17101870]
Show

 HP:0011628 Congenital defect of the pericardium "A developmental defect of the `pericardium` (FMA:9869) with congenital onset." [DDD:dbrown]
Show

 HP:0011682 Perimembranous ventricular septal defect "A ventricular septal defect that is confluent with and involves the membranous septum and is bordered by an atrioventricular valve, not including the type 3 VSDs." [DDD:dbrown, pmid:10798413]
Show

 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
Show

 HP:0040196 Mild microcephaly "Decreased occipito-frontal (head) circumference (OFC). For the microcephaly OFC must be between -3 SD and -2 SD compared to appropriate, age matched, normal standards (i.e. -3 SD <= OFC < -2 SD)." []
Show

 HP:0100259 Postaxial polydactyly "A form of polydactyly in which the extra digit or digits are localized on the side of the fifth finger or fifth toe." [HPO:probinson]
Show

 HP:0100801 Pancreatic aplasia "`Aplasia` (MPATH:58) of the `pancreas` (FMA:7198)." [HPO:sdoelken]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000071282 LMCD1 / Q9NZU5 / LIM and cysteine rich domains 1  / complex / reaction






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr