ENSG00000130700


Homo sapiens

Features
Gene ID: ENSG00000130700
  
Biological name :GATA5
  
Synonyms : GATA5 / GATA binding protein 5 / Q9BWX5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: -1
Band: q13.33
Gene start: 62463497
Gene end: 62475970
  
Corresponding Affymetrix probe sets: 238095_at (Human Genome U133 Plus 2.0 Array)   238197_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000252997
NCBI entrez gene - 140628     See in Manteia.
OMIM - 611496
RefSeq - NM_080473
RefSeq - XM_006723699
RefSeq Peptide - NP_536721
swissprot - Q9BWX5
Ensembl - ENSG00000130700
  
Related genetic diseases (OMIM): 617912 - Congenital heart defects, multiple types, 5, 617912

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gata5ENSDARG00000017821Danio rerio
 GATA5ENSGALG00000005352Gallus gallus
 Gata5ENSMUSG00000015627Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GATA4 / P43694 / GATA binding protein 4ENSG0000013657448
GATA6 / Q92908 / GATA binding protein 6ENSG0000014144847
GATA2 / P23769 / GATA binding protein 2ENSG0000017934835
GATA1 / P15976 / GATA binding protein 1ENSG0000010214534
GATA3 / P23771 / GATA binding protein 3ENSG0000010748532
TRPS1 / Q9UHF7 / transcriptional repressor GATA binding 1ENSG0000010444725


Protein motifs (from Interpro)
Interpro ID Name
 IPR000679  Zinc finger, GATA-type
 IPR008013  GATA-type transcription activator, N-terminal
 IPR013088  Zinc finger, NHR/GATA-type
 IPR016375  Transcription factor GATA-4/5/6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007596 blood coagulation TAS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0060575 intestinal epithelial cell differentiation IDA
 biological_processGO:0071773 cellular response to BMP stimulus IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005667 transcription factor complex IBA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001085 RNA polymerase II transcription factor binding IBA
 molecular_functionGO:0001158 enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Factors involved in megakaryocyte development and platelet production


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000233 Thin vermillion border 
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 HP:0000268 Dolichocephaly 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000520 Proptosis 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0001647 Bicuspid aortic valve "The presence of a bicuspid `aortic valve` (FMA:7236)." [HPO:probinson]
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 HP:0001650 Aortic stenosis "The presence of a stenosis (narrowing) of the aortic valve." [HPO:curators]
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 HP:0001659 Aortic insufficiency "An insufficiency of the aortic valve, leading to regurgitation (backward flow) of blood from the aorta into the left ventricle." [HPO:curators]
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 HP:0001680 Coarctation of aorta "Coarctation of the aorta is a narrowing or constriction of the aorta just distal to the origin of the left subclavian artery." [HPO:curators]
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004380 Aortic valve calcification 
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 HP:0004383 Hypoplastic left heart 
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 HP:0004467 Preauricular sinus "The preauricular sinus is a benign congenital lesion of the preauricular soft tissue consisting of a blind-ending narrow tube or pit. It is also known as preauricular pit, preauricular fistula, preauricular tract and preauricular cyst. It can be asymptomatic or present as an infected and discharging sinus. It presents as a small pit adjacent to the external ear usually located at the anterior margin of the ascending limb of the helix." [HPO:curators]
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 HP:0004933 ascending aortic dissection 
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 HP:0004962 Thoracic aorta calcification 
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 HP:0005105 Abnormal nasal morphology 
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 HP:0005113 Dilatation of the aortic arch 
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 HP:0009891 Hypoplasia of the supraorbital ridges "Underdevelopment of the supraorbital ridges." [HPO:curators]
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 HP:0011103 Abnormality of the left ventricular outflow tract "An abnormality of the `outflow tract of the left ventricle` (FMA:9473)." [HPO:probinson]
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 HP:0030148 Heart murmur "An extra or unusual sound heard during a heartbeat caused vibrations resulting from the flow of blood through the heart." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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