ENSG00000104447


Homo sapiens

Features
Gene ID: ENSG00000104447
  
Biological name :TRPS1
  
Synonyms : Q9UHF7 / transcriptional repressor GATA binding 1 / TRPS1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: -1
Band: q23.3
Gene start: 115408496
Gene end: 115809673
  
Corresponding Affymetrix probe sets: 218502_s_at (Human Genome U133 Plus 2.0 Array)   222651_s_at (Human Genome U133 Plus 2.0 Array)   224218_s_at (Human Genome U133 Plus 2.0 Array)   234351_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000428680
Ensembl peptide - ENSP00000428121
Ensembl peptide - ENSP00000428910
Ensembl peptide - ENSP00000492037
Ensembl peptide - ENSP00000430803
Ensembl peptide - ENSP00000430383
Ensembl peptide - ENSP00000429174
Ensembl peptide - ENSP00000220888
Ensembl peptide - ENSP00000379063
Ensembl peptide - ENSP00000379065
Ensembl peptide - ENSP00000400360
Ensembl peptide - ENSP00000405028
NCBI entrez gene - 7227     See in Manteia.
OMIM - 604386
RefSeq - XM_017013801
RefSeq - NM_001282902
RefSeq - NM_001282903
RefSeq - NM_001330599
RefSeq - NM_014112
RefSeq - XM_005251049
RefSeq - XM_006716625
RefSeq - XM_011517264
RefSeq - XM_011517266
RefSeq - XM_011517267
RefSeq - XM_011517268
RefSeq Peptide - NP_001269831
RefSeq Peptide - NP_001317528
RefSeq Peptide - NP_054831
RefSeq Peptide - NP_001269832
swissprot - C9J6L7
swissprot - F8W8T0
swissprot - H0YAV4
swissprot - H0YC29
swissprot - A0A1D5RMP4
swissprot - Q9UHF7
swissprot - E7EVN4
swissprot - E5RJ97
swissprot - E5RFF3
Ensembl - ENSG00000104447
  
Related genetic diseases (OMIM): 190350 - Trichorhinophalangeal syndrome, type I, 190350
  190351 - Trichorhinophalangeal syndrome, type III, 190351

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trps1ENSDARG00000104082Danio rerio
 TRPS1ENSGALG00000031700Gallus gallus
 Trps1ENSMUSG00000038679Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GATA6 / Q92908 / GATA binding protein 6ENSG000001414489
GATA5 / Q9BWX5 / GATA binding protein 5ENSG000001307008
GATA2 / P23769 / GATA binding protein 2ENSG000001793488
GATA1 / P15976 / GATA binding protein 1ENSG000001021458
GATA3 / P23771 / GATA binding protein 3ENSG000001074858
GATA4 / P43694 / GATA binding protein 4ENSG000001365748


Protein motifs (from Interpro)
Interpro ID Name
 IPR000679  Zinc finger, GATA-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR013088  Zinc finger, NHR/GATA-type
 IPR028440  Transcription factor TRPS1
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0001501 skeletal system development TAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0006607 NLS-bearing protein import into nucleus TAS
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0032330 regulation of chondrocyte differentiation ISS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0051291 protein heterooligomerization IMP
 cellular_componentGO:0000790 nuclear chromatin IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005667 transcription factor complex IBA
 cellular_componentGO:0032991 protein-containing complex IMP
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001085 RNA polymerase II transcription factor binding IBA
 molecular_functionGO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IC
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding TAS
 molecular_functionGO:0019904 protein domain specific binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
Show

 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
Show

 HP:0000174 Abnormality of palate "Any abnormality of the `palate` (FMA:54549), i.e., of roof of the mouth)." [HPO:probinson]
Show

 HP:0000189 Narrow palate "Width of the palate more than 2 SD below the mean (objective) or apparently decreased palatal width (subjective)." [pmid:19125428]
Show

 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
Show

 HP:0000219 Thin upper lip 
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000319 Flat philtrum 
Show

 HP:0000325 Triangular facies 
Show

 HP:0000343 Long philtrum 
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000368 Low-set, posteriorly rotated ears 
Show

 HP:0000400 Large ears 
Show

 HP:0000405 Hearing loss, conductive 
Show

 HP:0000411 Protruding ears 
Show

 HP:0000414 Bulbous nose 
Show

 HP:0000430 Hypoplastic nasal alae "Thinned, deficient, or excessively arched `ala nasi` (FMA:59519)." [pmid:19152422]
Show

 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
Show

 HP:0000447 Pear-shaped nose 
Show

 HP:0000535 Sparse eyebrows 
Show

 HP:0000574 Thick eyebrows 
Show

 HP:0000653 Sparse eyelashes "Decreased density/number of eyelashes." [pmid:19125427]
Show

 HP:0000670 Carious teeth 
Show

 HP:0000678 Dental overcrowding 
Show

 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
Show

 HP:0000689 Dental malocclusion "Dental malocclusion refers to an abnormality of the occlusion, or alignment, of the teeth and the way the upper and lower teeth fit together, resulting in overcrowding of teeth or in abnormal bite patterns." [HPO:curators]
Show

 HP:0000691 Microdontia 
Show

 HP:0000707 Neurological abnormality "An abnormality of the central or peripheral nervous system." [HPO:curators]
Show

 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
Show

 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
Show

 HP:0001156 Brachydactyly 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001373 Joint dislocation "Displacement or malalignment of joints." [HPO:curators]
Show

 HP:0001385 Hip dysplasia 
Show

 HP:0001582 Loose, redundant skin 
Show

 HP:0001598 Koilonychia 
Show

 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
Show

 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
Show

 HP:0001808 Fragile nails 
Show

 HP:0001816 Thin nails 
Show

 HP:0001820 Leukonychia 
Show

 HP:0001883 Talipes 
Show

 HP:0002002 Deep philtrum 
Show

 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
Show

 HP:0002119 Ventriculomegaly 
Show

 HP:0002205 Recurrent respiratory infections 
Show

 HP:0002209 Sparse scalp hair "Sparseness of the `head hair` (FMA:54241)." [HPO:probinson]
Show

 HP:0002213 Fine hair 
Show

 HP:0002217 Slow-growing hair 
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002653 Bone pain 
Show

 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
Show

 HP:0002758 Osteoarthritis 
Show

 HP:0002805 Accelerated bone age after puberty 
Show

 HP:0002829 Arthralgia 
Show

 HP:0002857 Genu valgum 
Show

 HP:0003279 Coxa magna 
Show

 HP:0003307 Hyperlordosis 
Show

 HP:0003370 Flat capital femoral epiphyses 
Show

 HP:0003691 Scapular winging 
Show

 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
Show

 HP:0004279 Hypoplastic hand 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0005039 multiple exostoses of long tubular bones 
Show

 HP:0005338 Sparse lateral eyebrows 
Show

 HP:0005692 Joint hyperflexibility 
Show

 HP:0005743 Abnormal femoral head with degenerative changes 
Show

 HP:0006253 Swelling of proximal interphalangeal joints 
Show

 HP:0007598 Bilateral single palmar creases 
Show

 HP:0008070 Sparse hair 
Show

 HP:0008947 Infantile muscular hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in infancy." [HPO:curators]
Show

 HP:0009118 Aplasia/Hypoplasia of the mandible "Absence or underdevelopment of the mandible." [HPO:curators]
Show

 HP:0009381 Hypoplastic/small fingers 
Show

 HP:0009803 Hypoplastic/small phalanges of the hand 
Show

 HP:0009882 Hypoplasia of the distal phalanges of the hand 
Show

 HP:0009928 Ala nasi, thick "Increase in bulk of the ala nasi." [pmid:19152422]
Show

 HP:0010049 Hypoplastic/short metacarpal bones 
Show

 HP:0010230 Cone-shaped epiphyses of the phalanges of the hand "A cone-shaped appearance of the epiphyses of the fingers of the hand, producing a ball-in-a-socket appearance. The related entity angel-shaped epiphysis refers to a pronounced cone-shaped epiphysis in combination with a pseudoepiphysis at the distal end of a phalanx." [HPO:curators]
Show

 HP:0010252 Ivory epiphyses of the distal phalanges of the hand 
Show

 HP:0010259 Cone-shaped epiphyses of the middle phalanges of the hand 
Show

 HP:0010270 Cone-shaped epiphyses of the proximal phalanges of the hand 
Show

 HP:0010300 Abnormally low-pitched voice "An abnormally low-pitched voice." [HPO:curators]
Show

 HP:0010579 Cone-shaped epiphyses 
Show

 HP:0010743 Hypoplasia of the metatarsal bones 
Show

 HP:0011069 Increased number of teeth "The presence of a `supernumerary` (PATO:0000470), i.e., extra, `tooth` (FMA:12516) or teeth." [HPO:ibailleulforestier]
Show

 HP:0011341 Long upper lip "Increased width of the `upper lip` (FMA:59817)." [DDD:jhurst]
Show

 HP:0011823 Chin with horizontal crease "Horizontal crease or fold situated below the vermilion border of the lower lip and above the fatty pad of the chin, with the face at rest." [pmid:19125436]
Show

 HP:0011910 Shortening of all phalanges of fingers "Abnormal reduction in length affecting all phalanges." [HPO:probinson]
Show

 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
Show

 HP:0045074 Thin eyebrow "Decreased diameter of eyebrow hairs." []
Show

 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr