ENSGALG00000031700


Gallus gallus

Features
Gene ID: ENSGALG00000031700
  
Biological name :TRPS1
  
Synonyms : transcriptional repressor GATA binding 1 / TRPS1
  
Possible biological names infered from orthology : Q9UHF7
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 134923027
Gene end: 135090061
  
Corresponding Affymetrix probe sets: GgaAffx.10280.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000054377
Ensembl peptide - ENSGALP00000057109
NCBI entrez gene - 420289     See in Manteia.
RefSeq - XM_015283052
RefSeq - XM_015283049
RefSeq - XM_015283050
RefSeq - XM_004940005
RefSeq - XM_015283037
RefSeq - XM_015283038
RefSeq - XM_015283039
RefSeq - XM_015283041
RefSeq - XM_015283042
RefSeq - XM_015283043
RefSeq - XM_015283044
RefSeq - XM_015283045
RefSeq - XM_015283046
RefSeq - XM_015283047
RefSeq - XM_015283048
swissprot - A0A1D5PVY0
swissprot - A0A1D5PND7
Ensembl - ENSGALG00000031700
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trps1ENSDARG00000104082Danio rerio
 TRPS1ENSG00000104447Homo sapiens
 Trps1ENSMUSG00000038679Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GATA3 / P23825 / GATA-binding factor 3 / P23771* / P23772* / GATA binding protein 3* / Mus musculus GATA binding protein 3 (Gata3), transcript variant 3, mRNA.*ENSGALG000000292708
GATA4 / GATA binding protein 4 / P43694* / Q08369* / Transcription factor GATA-4 *ENSGALG000000166628
GATA2 / P23824 / GATA-binding factor 2 / O09100* / P23769* / GATA binding protein 2* / Mus musculus GATA binding protein 2 (Gata2), transcript variant 2, mRNA.*ENSGALG000000059098
GATA5 / transcription factor GATA-5 / P97489* / Q9BWX5* / GATA binding protein 5*ENSGALG000000053528
GATA6 / transcription factor GATA-6 / Q61169* / Q92908* / GATA binding protein 6*ENSGALG000000149768


Protein motifs (from Interpro)
Interpro ID Name
 IPR000679  Zinc finger, GATA-type
 IPR013088  Zinc finger, NHR/GATA-type
 IPR028440  Transcription factor TRPS1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0051291 protein heterooligomerization IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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