ENSDARG00000104082


Danio rerio

Features
Gene ID: ENSDARG00000104082
  
Biological name :trps1
  
Synonyms : trichorhinophalangeal syndrome I / trps1
  
Possible biological names infered from orthology : Q9UHF7 / transcriptional repressor GATA binding 1
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 45375669
Gene end: 45650994
  
Corresponding Affymetrix probe sets: Dr.23594.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000137858
Ensembl peptide - ENSDARP00000137577
NCBI entrez gene - 795613     See in Manteia.
RefSeq - NM_001177934
RefSeq Peptide - NP_001171405
swissprot - F1QEY1
swissprot - F1QD34
ZFIN ID - ZDB-GENE-030131-8404
Ensembl - ENSDARG00000104082
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRPS1ENSGALG00000031700Gallus gallus
 TRPS1ENSG00000104447Homo sapiens
 Trps1ENSMUSG00000038679Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gata3 / Q91428 / GATA binding protein 3 / P23771* / P23772* / Mus musculus GATA binding protein 3 (Gata3), transcript variant 3, mRNA.*ENSDARG000000165269
gata6 / GATA binding protein 6 / Q61169* / Q92908* / Transcription factor GATA-6 *ENSDARG000001035898
gata2a / GATA binding protein 2a / GATA2* / O09100* / P23769* / GATA binding protein 2* / Mus musculus GATA binding protein 2 (Gata2), transcript variant 2, mRNA.*ENSDARG000000593278
gata4 / GATA binding protein 4 / P43694* / Q08369* / Transcription factor GATA-4 *ENSDARG000000989527
gata5 / GATA binding protein 5 / P97489* / Q9BWX5* / Transcription factor GATA-5 *ENSDARG000000178217
gata2b / GATA binding protein 2bENSDARG000000090947
gata1a / GATA binding protein 1a / GATA1* / P17679* / P15976* / GATA binding protein 1* / Erythroid transcription factor *ENSDARG000000134777
gata1b / GATA binding protein 1b / GATA1* / P17679* / P15976* / GATA binding protein 1* / Erythroid transcription factor *ENSDARG000000591306


Protein motifs (from Interpro)
Interpro ID Name
 IPR000679  Zinc finger, GATA-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR013088  Zinc finger, NHR/GATA-type
 IPR028440  Transcription factor TRPS1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005667 transcription factor complex IBA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0001085 RNA polymerase II transcription factor binding IBA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003682 chromatin binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001276 pharyngeal arch 2 skeleton pharyngeal arch 2 skeleton embryonic skeletal joint development decreased process quality , abnormal
pharyngeal arch 2 skeleton joint decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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