Manteia

ENSGALG00000016662

Gallus gallus

Features

Gene ID:	ENSGALG00000016662

Biological name :	GATA4

Synonyms :	GATA4 / GATA binding protein 4

Possible biological names infered from orthology :	P43694 / Q08369 / Transcription factor GATA-4

Species:	Gallus gallus

Chr. number:	3
Strand:	1
Band:
Gene start:	107785815
Gene end:	107811652

Corresponding Affymetrix probe sets:	Gga.13092.1.S1_at (Chicken Array) Gga.795.1.S1_at (Chicken Array)

Cross references:	Ensembl peptide - ENSGALP00000030912 NCBI entrez gene - 396392 See in Manteia. RefSeq - NM_001293106 RefSeq - XM_004935896 RefSeq - XM_015285094 RefSeq Peptide - NP_001280035 swissprot - E1C9C6 Ensembl - ENSGALG00000016662

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
GATA6 / transcription factor GATA-6 / Q61169* / Q92908* / GATA binding protein 6*	ENSGALG00000014976	51
GATA5 / transcription factor GATA-5 / P97489* / Q9BWX5* / GATA binding protein 5*	ENSGALG00000005352	50
GATA3 / P23825 / GATA-binding factor 3 / P23771* / P23772* / GATA binding protein 3* / Mus musculus GATA binding protein 3 (Gata3), transcript variant 3, mRNA.*	ENSGALG00000029270	34
GATA2 / P23824 / GATA-binding factor 2 / O09100* / P23769* / GATA binding protein 2* / Mus musculus GATA binding protein 2 (Gata2), transcript variant 2, mRNA.*	ENSGALG00000005909	33
TRPS1 / transcriptional repressor GATA binding 1 / Q9UHF7*	ENSGALG00000031700	22

Protein motifs (from Interpro)

Interpro ID	Name
IPR000679	Zinc finger, GATA-type
IPR008013	GATA-type transcription activator, N-terminal
IPR013088	Zinc finger, NHR/GATA-type
IPR016375	Transcription factor GATA-4/5/6

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0003197	endocardial cushion development	IEA
biological_process	GO:0003290	atrial septum secundum morphogenesis	IEA
biological_process	GO:0006355	regulation of transcription, DNA-templated	IEA
biological_process	GO:0008584	male gonad development	IEA
biological_process	GO:0042493	response to drug	IEA
biological_process	GO:0045893	positive regulation of transcription, DNA-templated	IEA
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II	IEA
biological_process	GO:0060413	atrial septum morphogenesis	IEA
biological_process	GO:0060575	intestinal epithelial cell differentiation	IEA
cellular_component	GO:0005634	nucleus	IDA
cellular_component	GO:0016604	nuclear body	IEA
cellular_component	GO:0090575	RNA polymerase II transcription factor complex	IEA
molecular_function	GO:0001076	transcription factor activity, RNA polymerase II transcription factor binding	IEA
molecular_function	GO:0003677	DNA binding	IEA
molecular_function	GO:0003700	DNA-binding transcription factor activity	IEA
molecular_function	GO:0003713	transcription coactivator activity	IEA
molecular_function	GO:0008134	transcription factor binding	IEA
molecular_function	GO:0008270	zinc ion binding	IEA
molecular_function	GO:0043565	sequence-specific DNA binding	IEA
molecular_function	GO:0044212	transcription regulatory region DNA binding	IEA
molecular_function	GO:0046872	metal ion binding	IEA
molecular_function	GO:0070410	co-SMAD binding	IEA

Pathways (from Reactome)

Pathway description

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

1 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr