ENSG00000136574


Homo sapiens

Features
Gene ID: ENSG00000136574
  
Biological name :GATA4
  
Synonyms : GATA4 / GATA binding protein 4 / P43694
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: 1
Band: p23.1
Gene start: 11676959
Gene end: 11760002
  
Corresponding Affymetrix probe sets: 1553131_a_at (Human Genome U133 Plus 2.0 Array)   1570276_a_at (Human Genome U133 Plus 2.0 Array)   205517_at (Human Genome U133 Plus 2.0 Array)   230855_at (Human Genome U133 Plus 2.0 Array)   243692_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000432278
Ensembl peptide - ENSP00000482268
Ensembl peptide - ENSP00000473671
Ensembl peptide - ENSP00000473598
Ensembl peptide - ENSP00000435712
Ensembl peptide - ENSP00000435347
Ensembl peptide - ENSP00000435043
Ensembl peptide - ENSP00000334458
NCBI entrez gene - 2626     See in Manteia.
OMIM - 600576
RefSeq - XM_011543818
RefSeq - XM_005272385
RefSeq - XM_011543817
RefSeq - XM_006716248
RefSeq - NM_001308093
RefSeq - NM_001308094
RefSeq - NM_002052
RefSeq - XM_005272386
RefSeq - XM_017013312
RefSeq Peptide - NP_001295023
RefSeq Peptide - NP_001295022
RefSeq Peptide - NP_002043
swissprot - R4GND5
swissprot - P43694
swissprot - E9PRI5
swissprot - A0A087WZ09
swissprot - B3KUF4
swissprot - B6DU75
swissprot - E9PKS4
Ensembl - ENSG00000136574
  
Related genetic diseases (OMIM): 615542 - ?Testicular anomalies with or without congenital heart disease, 615542
  607941 - Atrial septal defect 2, 607941
  614430 - Atrioventricular septal defect 4, 614430
  187500 - Tetralogy of Fallot, 187500
  614429 - Ventricular septal defect 1, 614429

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gata4ENSDARG00000098952Danio rerio
 GATA4ENSGALG00000016662Gallus gallus
 Gata4ENSMUSG00000021944Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GATA6 / Q92908 / GATA binding protein 6ENSG0000014144851
GATA5 / Q9BWX5 / GATA binding protein 5ENSG0000013070043
GATA3 / P23771 / GATA binding protein 3ENSG0000010748532
GATA2 / P23769 / GATA binding protein 2ENSG0000017934831
GATA1 / P15976 / GATA binding protein 1ENSG0000010214529
TRPS1 / Q9UHF7 / transcriptional repressor GATA binding 1ENSG0000010444723


Protein motifs (from Interpro)
Interpro ID Name
 IPR000679  Zinc finger, GATA-type
 IPR008013  GATA-type transcription activator, N-terminal
 IPR013088  Zinc finger, NHR/GATA-type
 IPR016375  Transcription factor GATA-4/5/6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001947 heart looping ISS
 biological_processGO:0003197 endocardial cushion development ISS
 biological_processGO:0003208 cardiac ventricle morphogenesis TAS
 biological_processGO:0003215 cardiac right ventricle morphogenesis ISS
 biological_processGO:0003281 ventricular septum development ISS
 biological_processGO:0003289 atrial septum primum morphogenesis ISS
 biological_processGO:0003290 atrial septum secundum morphogenesis IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II ISS
 biological_processGO:0007267 cell-cell signaling ISS
 biological_processGO:0007492 endoderm development TAS
 biological_processGO:0007596 blood coagulation TAS
 biological_processGO:0008584 male gonad development IMP
 biological_processGO:0009612 response to mechanical stimulus IEA
 biological_processGO:0010507 negative regulation of autophagy IEA
 biological_processGO:0010575 positive regulation of vascular endothelial growth factor production ISS
 biological_processGO:0030513 positive regulation of BMP signaling pathway IEA
 biological_processGO:0033189 response to vitamin A IEA
 biological_processGO:0035054 embryonic heart tube anterior/posterior pattern specification ISS
 biological_processGO:0042493 response to drug IMP
 biological_processGO:0045766 positive regulation of angiogenesis ISS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048617 embryonic foregut morphogenesis ISS
 biological_processGO:0051891 positive regulation of cardioblast differentiation ISS
 biological_processGO:0055007 cardiac muscle cell differentiation IEA
 biological_processGO:0060290 transdifferentiation IEA
 biological_processGO:0060413 atrial septum morphogenesis IMP
 biological_processGO:0060575 intestinal epithelial cell differentiation IDA
 biological_processGO:0061049 cell growth involved in cardiac muscle cell development IEA
 biological_processGO:0071333 cellular response to glucose stimulus IEA
 biological_processGO:0086004 regulation of cardiac muscle cell contraction IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0016604 nuclear body IDA
 cellular_componentGO:0090575 RNA polymerase II transcription factor complex IDA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IEA
 molecular_functionGO:0001076 transcription factor activity, RNA polymerase II transcription factor binding IDA
 molecular_functionGO:0001085 RNA polymerase II transcription factor binding IBA
 molecular_functionGO:0001158 enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003713 transcription coactivator activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0019901 protein kinase binding IEA
 molecular_functionGO:0033613 activating transcription factor binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051525 NFAT protein binding IEA
 molecular_functionGO:0070410 co-SMAD binding IPI


Pathways (from Reactome)
Pathway description
YAP1- and WWTR1 (TAZ)-stimulated gene expression
Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP)
Physiological factors
Factors involved in megakaryocyte development and platelet production


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000027 Azoospermia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000030 Gonadoblastoma, male 
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 HP:0000045 Abnormality of the scrotum 
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000051 Perineal hypospadias 
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 HP:0000054 Micropenis 
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 HP:0000058 Abnormality of the labia 
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 HP:0000062 Ambiguous genitalia 
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 HP:0000100 Nephrotic syndrome 
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 HP:0000133 Gonadal dysgenesis 
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 HP:0000149 Gonadoblastoma, female 
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000233 Thin vermillion border 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000268 Dolichocephaly 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000293 Full cheeks 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000426 Prominent nasal bridge 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000470 Short neck 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000490 Deep set eyes 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000520 Proptosis 
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000771 Gynecomastia 
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 HP:0000776 Diaphragmatic hernia "Diaphragmatic hernia is the result of a developmental defect causing an abnormal opening in the diaphragm, through which abdominal organs (stomach, spleen, liver, and intestines) can protrude into the thoracic cavity. This usually causes respiratory distress in the newborn period." [HPO:curators]
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 HP:0000786 Primary amenorrhea 
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 HP:0000815 Hypergonadotropic hypogonadism "Reduced function of the gonads (testes in males or ovaries in females) associated with excess pituitary gonadotropin secretion and resulting in delayed sexual development and growth delay." [HPO:curators]
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 HP:0000823 Delayed puberty 
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 HP:0000846 Adrenal insufficiency 
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 HP:0000868 Decreased fertility in females 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001182 Tapered fingers 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0001639 Hypertrophic cardiomyopathy 
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 HP:0001642 Pulmonic stenosis "A narrowing of the right ventricular outflow tract that can occur at the pulmonary valve (valvular stenosis) or just below the pulmonary valve (infundibular stenosis). Infundibular pulmonic stenosis is mostly caused by overgrowth of the heart muscle wall (hypertrophy of the septoparietal trabeculae). Pulmonic stenosis is often seen as a part of Fallot s tetralogy, in which case the events leading to the formation of the overriding aorta are also believed to be a cause of the pulmonic stenosis. The pulmonic stenosis is the major cause of the malformations seen in patients with Fallot tetralogy, with the other associated malformations acting as compensatory mechanisms to the pulmonic stenosis. The degree of stenosis varies between individuals with TOF, and is the primary determinant of symptoms and severity. This malformation is infrequently described as sub-pulmonary stenosis or subpulmonary obstruction." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001669 Transposition of the great vessels 
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 HP:0001679 Abnormalities of the aorta 
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001824 Weight loss 
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 HP:0002215 Sparse axillary hair 
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 HP:0002225 Sparse pubic hair 
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 HP:0002465 Poor speech 
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 HP:0002667 Nephroblastoma (Wilms tumor) "A kind of renal tumor primarily affecting children. It is characterized by an abnormal proliferation of the metanephric blastema cells, which are believed to be primitive embryologic cells of the kidney. Clinically, nephroblatoma usually presents as an abdominal mass, and in some cases with abdominal pain, hypertension, hematuria, and fever." [HPO:curators]
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003251 Male infertility 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004383 Hypoplastic left heart 
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 HP:0004415 Pulmonary artery stenosis 
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 HP:0004422 Biparietal narrowing "A narrowing of the biparietal diameter (i.e., of the transverse distance between the protuberances of the two parietal bones of the skull)." [HPO:curators]
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 HP:0004467 Preauricular sinus "The preauricular sinus is a benign congenital lesion of the preauricular soft tissue consisting of a blind-ending narrow tube or pit. It is also known as preauricular pit, preauricular fistula, preauricular tract and preauricular cyst. It can be asymptomatic or present as an infected and discharging sinus. It presents as a small pit adjacent to the external ear usually located at the anterior margin of the ascending limb of the helix." [HPO:curators]
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 HP:0005105 Abnormal nasal morphology 
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 HP:0006610 Wide intermamillary distance 
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 HP:0006695 Tricuspid and mitral valves are replaced by a single inlet valve 
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0008187 Absence of secondary sex characteristics 
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 HP:0008193 Primary gonadal insufficiency 
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 HP:0008214 Decreased serum estradiol 
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 HP:0008230 Decreased testosterone in males 
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 HP:0008232 Elevated follicle stimulating hormone 
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 HP:0008572 External ear malformation 
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 HP:0008665 Hypertrophic clitoris 
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 HP:0008715 Testicular dysgenesis 
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 HP:0008726 Hypoplastic vagina "Underdevelopment of the vagina." [HPO:curators]
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 HP:0008730 Female external genitalia in males "The presence of female external genitalia in a person with a male karyotype." [HPO:curators]
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 HP:0008734 Decreased testicular size 
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 HP:0009623 Proximally placed thumb "Proximally displaced thumb." [HPO:curators]
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 HP:0009891 Hypoplasia of the supraorbital ridges "Underdevelopment of the supraorbital ridges." [HPO:curators]
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 HP:0010059 Broad phalanges of the hallux 
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 HP:0010445 Ostium primum atrial septal defect "An ostium primum atrial septal defect is located in the most anterior and inferior aspect of the atrial septum. The ostium primum refers to an anterior and inferior opening (ostium) within the septum primum, which divides the rudimentary atrium during fetal development. The ostium primum is normally sealed by fusion of the superior and inferior endocardial cushions around 5 weeks gestation. Ostium primum defects result from a failure of the fusion of the embryologic endocardial cushion and septum primum." [HPO:curators]
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 HP:0010464 Streak ovary "A developmental disorder characterized by the progressive loss of primordial germ cells in the developing ovaries of an embryo, leading to hypoplastic ovaries composed of wavy connective tissue with occasional clumps of granulosa cells, and frequenty mesonephric or hilar cells." [HPO:curators]
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 HP:0011304 Broad thumb "Increased thumb width without increased dorso-ventral dimension." [pmid:19125433]
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 HP:0011969 Elevated luteinizing hormone "An elevated concentration of luteinizing hormone in the blood." [HPO:probinson]
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 HP:0012244 Abnormal sex determination "Anomaly of primary or secondary sexual development or characteristics." [HPO:probinson, MP:0002210]
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 HP:0012870 Vanishing testis "A condition which is considered to be due to the subsequent atrophy and disappearance in fetal life of an initially normal testis. In the presence of spermatic cord structures is evidence of the presence of the testis in early intrauterine life. When associated with a blind-ending spermatic cord, this entity is named as his absence of a testis in an otherwise normal 46XY male is usually unilateral and is assumed to be a consequence of intrauterine or perinatal torsion or infarction." [HPO:probinson, pmid:22985611]
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 HP:0030260 Microphallus "Length of penis more than 2 SD below the mean for age accompanied by hypospadias." [HPO:probinson, pmid:23650202]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100625 Enlarged thorax 
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 HP:0100779 Urogenital sinus anomaly "A rare birth defect in women where the urethra and vagina both open into a common channel." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000064393 HIPK2 / Q9H2X6 / homeodomain interacting protein kinase 2  / complex
 ENSG00000183072 NKX2-5 / P52952 / NK2 homeobox 5  / complex
 ENSG00000163349 HIPK1 / Q86Z02 / homeodomain interacting protein kinase 1  / complex






 

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