ENSG00000179348


Homo sapiens

Features
Gene ID: ENSG00000179348
  
Biological name :GATA2
  
Synonyms : GATA2 / GATA binding protein 2 / P23769
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: q21.3
Gene start: 128479427
Gene end: 128493185
  
Corresponding Affymetrix probe sets: 207954_at (Human Genome U133 Plus 2.0 Array)   209710_at (Human Genome U133 Plus 2.0 Array)   210358_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000417074
Ensembl peptide - ENSP00000419532
Ensembl peptide - ENSP00000418132
Ensembl peptide - ENSP00000345681
Ensembl peptide - ENSP00000400259
NCBI entrez gene - 2624     See in Manteia.
OMIM - 137295
RefSeq - NM_001145661
RefSeq - NM_001145662
RefSeq - NM_032638
RefSeq Peptide - NP_001139134
RefSeq Peptide - NP_116027
RefSeq Peptide - NP_001139133
swissprot - P23769
swissprot - A0A1D5RMQ8
swissprot - C9J965
Ensembl - ENSG00000179348
  
Related genetic diseases (OMIM): 601626 - {Leukemia, acute myeloid, susceptibility to}, 601626
  614038 - Emberger syndrome, 614038
  614172 - Immunodeficiency 21, 614172
  614286 - {Myelodysplastic syndrome, susceptibility to}, 614286

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gata2aENSDARG00000059327Danio rerio
 GATA2ENSGALG00000005909Gallus gallus
 Gata2ENSMUSG00000015053Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GATA3 / P23771 / GATA binding protein 3ENSG0000010748562
GATA1 / P15976 / GATA binding protein 1ENSG0000010214533
GATA6 / Q92908 / GATA binding protein 6ENSG0000014144832
GATA5 / Q9BWX5 / GATA binding protein 5ENSG0000013070029
GATA4 / P43694 / GATA binding protein 4ENSG0000013657428
TRPS1 / Q9UHF7 / transcriptional repressor GATA binding 1ENSG0000010444722


Protein motifs (from Interpro)
Interpro ID Name
 IPR000679  Zinc finger, GATA-type
 IPR013088  Zinc finger, NHR/GATA-type
 IPR016374  Transcription factor, GATA-2/3
 IPR029522  Transcription factor GATA-2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001655 urogenital system development IEA
 biological_processGO:0001709 cell fate determination IEA
 biological_processGO:0001764 neuron migration IEA
 biological_processGO:0001892 embryonic placenta development IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006909 phagocytosis IEA
 biological_processGO:0007204 positive regulation of cytosolic calcium ion concentration IEA
 biological_processGO:0007596 blood coagulation TAS
 biological_processGO:0010725 regulation of primitive erythrocyte differentiation IEA
 biological_processGO:0021514 ventral spinal cord interneuron differentiation IEA
 biological_processGO:0021533 cell differentiation in hindbrain IEA
 biological_processGO:0021902 commitment of neuronal cell to specific neuron type in forebrain IEA
 biological_processGO:0021954 central nervous system neuron development IEA
 biological_processGO:0021983 pituitary gland development IEA
 biological_processGO:0030097 hemopoiesis IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030182 neuron differentiation IEA
 biological_processGO:0033993 response to lipid IEA
 biological_processGO:0035019 somatic stem cell population maintenance IEA
 biological_processGO:0035065 regulation of histone acetylation IEA
 biological_processGO:0035854 eosinophil fate commitment IDA
 biological_processGO:0042472 inner ear morphogenesis IEA
 biological_processGO:0043306 positive regulation of mast cell degranulation IEA
 biological_processGO:0045599 negative regulation of fat cell differentiation IMP
 biological_processGO:0045638 negative regulation of myeloid cell differentiation IEA
 biological_processGO:0045648 positive regulation of erythrocyte differentiation IEA
 biological_processGO:0045650 negative regulation of macrophage differentiation IEA
 biological_processGO:0045654 positive regulation of megakaryocyte differentiation IEA
 biological_processGO:0045666 positive regulation of neuron differentiation IEA
 biological_processGO:0045746 negative regulation of Notch signaling pathway IDA
 biological_processGO:0045766 positive regulation of angiogenesis IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IMP
 biological_processGO:0048469 cell maturation IEA
 biological_processGO:0048663 neuron fate commitment IEA
 biological_processGO:0048873 homeostasis of number of cells within a tissue IEA
 biological_processGO:0050766 positive regulation of phagocytosis ISS
 biological_processGO:0060100 positive regulation of phagocytosis, engulfment IEA
 biological_processGO:0060216 definitive hemopoiesis IEA
 biological_processGO:0060872 semicircular canal development IEA
 biological_processGO:0070345 negative regulation of fat cell proliferation IMP
 biological_processGO:0090102 cochlea development IEA
 biological_processGO:0097154 GABAergic neuron differentiation IEA
 biological_processGO:1902036 regulation of hematopoietic stem cell differentiation TAS
 biological_processGO:2000178 negative regulation of neural precursor cell proliferation IDA
 biological_processGO:2000352 negative regulation of endothelial cell apoptotic process IMP
 biological_processGO:2000977 regulation of forebrain neuron differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005667 transcription factor complex IBA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001085 RNA polymerase II transcription factor binding IBA
 molecular_functionGO:0001158 enhancer sequence-specific DNA binding IDA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0070742 C2H2 zinc finger domain binding IPI


Pathways (from Reactome)
Pathway description
RUNX1 regulates transcription of genes involved in differentiation of HSCs
Factors involved in megakaryocyte development and platelet production


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000389 Chronic otitis media 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000465 Webbed neck 
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 HP:0000572 Visual loss 
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 HP:0000587 Abnormality of the optic nerve "Abnormality of the optic nerve (also known as cranial nerve II), which transmits visual information from the retina to the brain." [HPO:curators]
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 HP:0000601 Hypotelorism 
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 HP:0000978 Ecchymoses 
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 HP:0000980 Pallor 
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 HP:0001004 Lymphedema 
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 HP:0001182 Tapered fingers 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001824 Weight loss 
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 HP:0001873 Thrombocytopenia 
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 HP:0001875 Neutropenia 
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 HP:0001876 Pancytopenia 
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 HP:0001915 Aplastic anemia 
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 HP:0001945 Fever 
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 HP:0001974 Leukocytosis "An abnormal increase in the number of `leukocytes` (CL:0000738) in the `blood` (FMA:9670)." [HPO:probinson]
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 HP:0002017 Nausea and vomiting 
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 HP:0002076 Migraine 
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 HP:0002167 Neurological speech impairment 
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 HP:0002170 Intracranial hemorrhage "A hemorrhage (bleeding) occuring within the skull." [HPO:curators]
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002321 Vertigo "An abnormal sensation of spinning while the body is actually stationary." [HPO:curators]
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 HP:0002488 Acute leukemia 
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 HP:0002716 Lymphadenopathy 
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 HP:0002721 Immunodeficiency 
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 HP:0002841 Fungal infections, recurrent 
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 HP:0002863 Myelodysplasia 
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 HP:0002878 Early respiratory failure 
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 HP:0003010 Prolonged bleeding time 
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 HP:0003812 Phenotypic variability 
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 HP:0004429 Recurrent viral infections 
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 HP:0005528 Bone marrow hypoplasia 
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 HP:0005547 Myeloproliferative disorder 
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 HP:0011275 Recurrent mycobacterium avium complex infections "Increased susceptibility to mycobacterial avium complex infections, as manifested by recurrent episodes of mycobacterial infection." [HPO:probinson]
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 HP:0011991 Abnormal neutrophil cell number "A deviation from the normal range of neutrophil cell counts in the circulation." [HPO:probinson]
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 HP:0012176 Abnormality of natural killer cells "An anomaly of the `natural killer cell` (CL:0000623), which is a lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells." [HPO:probinson, pmid:21212348]
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 HP:0012312 Monocytopenia "An decreased number of circulating `monocytes` (CL:0000576)." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0100658 Cellulitis 
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 HP:0100724 Hypercoagulability 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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