ENSG00000183072


Homo sapiens

Features
Gene ID: ENSG00000183072
  
Biological name :NKX2-5
  
Synonyms : NK2 homeobox 5 / NKX2-5 / P52952
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q35.1
Gene start: 173232109
Gene end: 173235357
  
Corresponding Affymetrix probe sets: 206578_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000327758
Ensembl peptide - ENSP00000429905
Ensembl peptide - ENSP00000427906
Ensembl peptide - ENSP00000395378
NCBI entrez gene - 1482     See in Manteia.
OMIM - 600584
RefSeq - XM_017009071
RefSeq - NM_001166175
RefSeq - NM_001166176
RefSeq - NM_004387
RefSeq Peptide - NP_001159648
RefSeq Peptide - NP_001159647
RefSeq Peptide - NP_004378
swissprot - P52952
swissprot - A0A0S2Z383
swissprot - E5RH49
swissprot - A0A0S2Z3K2
Ensembl - ENSG00000183072
  
Related genetic diseases (OMIM): 108900 - Atrial septal defect 7, with or without AV conduction defects, 108900
  217095 - Conotruncal heart malformations, variable, 217095
  614435 - Hypoplastic left heart syndrome 2, 614435
  225250 - Hypothyroidism, congenital nongoitrous, 5, 225250
  187500 - Tetralogy of Fallot, 187500
  614432 - Ventricular septal defect 3, 614432

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nkx2.3ENSDARG00000039095Danio rerio
 nkx2.5ENSDARG00000018004Danio rerio
 nkx2.7ENSDARG00000021232Danio rerio
 Nkx2-5ENSMUSG00000015579Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NKX2-3 / Q8TAU0 / NK2 homeobox 3ENSG0000011991948
A6NCS4 / NKX2-6 / NK2 homeobox 6ENSG0000018005339
NKX2-1 / P43699 / NK2 homeobox 1ENSG0000013635231
NKX2-4 / Q9H2Z4 / NK2 homeobox 4ENSG0000012581631
NKX2-2 / O95096 / NK2 homeobox 2ENSG0000012582027
NKX2-8 / O15522 / NK2 homeobox 8ENSG0000013632726
NKX3-2 / P78367 / NK3 homeobox 2ENSG0000010970524
HMX3 / A6NHT5 / H6 family homeobox 3ENSG0000018862020
HMX1 / Q9NP08 / H6 family homeobox 1ENSG0000021561219
NKX3-1 / Q99801 / NK3 homeobox 1ENSG0000016703419
HMX2 / A2RU54 / H6 family homeobox 2ENSG0000018881618


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa
 IPR033629  Homeobox protein NKX-2.5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II ISS
 biological_processGO:0001570 vasculogenesis ISS
 biological_processGO:0001947 heart looping ISS
 biological_processGO:0003007 heart morphogenesis ISS
 biological_processGO:0003148 outflow tract septum morphogenesis IMP
 biological_processGO:0003151 outflow tract morphogenesis IEA
 biological_processGO:0003161 cardiac conduction system development IMP
 biological_processGO:0003162 atrioventricular node development IEA
 biological_processGO:0003166 bundle of His development IEA
 biological_processGO:0003168 Purkinje myocyte differentiation IEA
 biological_processGO:0003208 cardiac ventricle morphogenesis IEA
 biological_processGO:0003211 cardiac ventricle formation IEA
 biological_processGO:0003221 right ventricular cardiac muscle tissue morphogenesis IMP
 biological_processGO:0003222 ventricular trabecula myocardium morphogenesis IEA
 biological_processGO:0003278 apoptotic process involved in heart morphogenesis IEA
 biological_processGO:0003285 septum secundum development IMP
 biological_processGO:0003342 proepicardium development IEA
 biological_processGO:0003350 pulmonary myocardium development IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0007512 adult heart development IMP
 biological_processGO:0008284 positive regulation of cell proliferation ISS
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0010667 negative regulation of cardiac muscle cell apoptotic process IMP
 biological_processGO:0010735 positive regulation of transcription via serum response element binding ISS
 biological_processGO:0010765 positive regulation of sodium ion transport ISS
 biological_processGO:0010832 negative regulation of myotube differentiation IMP
 biological_processGO:0030097 hemopoiesis ISS
 biological_processGO:0030154 cell differentiation ISS
 biological_processGO:0030509 BMP signaling pathway IEA
 biological_processGO:0030878 thyroid gland development IMP
 biological_processGO:0035050 embryonic heart tube development ISS
 biological_processGO:0043066 negative regulation of apoptotic process ISS
 biological_processGO:0045214 sarcomere organization IEA
 biological_processGO:0045666 positive regulation of neuron differentiation IMP
 biological_processGO:0045823 positive regulation of heart contraction ISS
 biological_processGO:0045892 negative regulation of transcription, DNA-templated ISS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated ISS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IGI
 biological_processGO:0048536 spleen development ISS
 biological_processGO:0048738 cardiac muscle tissue development IEA
 biological_processGO:0051891 positive regulation of cardioblast differentiation ISS
 biological_processGO:0055005 ventricular cardiac myofibril assembly IEA
 biological_processGO:0055007 cardiac muscle cell differentiation ISS
 biological_processGO:0055008 cardiac muscle tissue morphogenesis IMP
 biological_processGO:0055014 atrial cardiac muscle cell development ISS
 biological_processGO:0055015 ventricular cardiac muscle cell development ISS
 biological_processGO:0055117 regulation of cardiac muscle contraction ISS
 biological_processGO:0060037 pharyngeal system development ISS
 biological_processGO:0060038 cardiac muscle cell proliferation IEA
 biological_processGO:0060043 regulation of cardiac muscle cell proliferation IEA
 biological_processGO:0060047 heart contraction IEA
 biological_processGO:0060048 cardiac muscle contraction IEA
 biological_processGO:0060070 canonical Wnt signaling pathway IEA
 biological_processGO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter ISS
 biological_processGO:0060347 heart trabecula formation IEA
 biological_processGO:0060412 ventricular septum morphogenesis IMP
 biological_processGO:0060413 atrial septum morphogenesis IMP
 biological_processGO:0060928 atrioventricular node cell development IEA
 biological_processGO:0060929 atrioventricular node cell fate commitment IEA
 biological_processGO:0060971 embryonic heart tube left/right pattern formation IEA
 biological_processGO:0072358 cardiovascular system development IEA
 biological_processGO:0090090 negative regulation of canonical Wnt signaling pathway ISS
 biological_processGO:1903779 regulation of cardiac conduction IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005667 transcription factor complex IC
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0032993 protein-DNA complex IDA
 cellular_componentGO:0090575 RNA polymerase II transcription factor complex IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IMP
 molecular_functionGO:0001190 transcriptional activator activity, RNA polymerase II transcription factor binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0010736 serum response element binding ISS
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IDA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IDA
 molecular_functionGO:0046982 protein heterodimerization activity ISS


Pathways (from Reactome)
Pathway description
YAP1- and WWTR1 (TAZ)-stimulated gene expression
Physiological factors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000158 Macroglossia "Increased length and width of the tongue." [pmid:19125428]
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 HP:0000233 Thin vermillion border 
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 HP:0000239 Large fontanelles "In newborns, the two frontal bones, two parietal bones, and one occipital bone are joined by fibrous sutures, which form a small posterior fontanelle, and a larger, diamond-shaped anterior fontanelle. These regions allow for the skull to pass the birth canal and for later growth. The fontanelles gradually ossify, whereby the posterior fontanelle usually closes by eight weeks and the anterior fontanelle by the 9th to 16th month of age. Large fontanelles are diagnosed if the fontanelles are larger than age-dependent norms." [HPO:curators]
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 HP:0000268 Dolichocephaly 
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 HP:0000280 Coarse facial features 
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 HP:0000316 Hypertelorism 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000520 Proptosis 
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 HP:0000821 Hypothyroidism 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000851 Congenital hypothyroidism 
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001510 Growth retardation 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001647 Bicuspid aortic valve "The presence of a bicuspid `aortic valve` (FMA:7236)." [HPO:probinson]
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 HP:0001650 Aortic stenosis "The presence of a stenosis (narrowing) of the aortic valve." [HPO:curators]
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 HP:0001659 Aortic insufficiency "An insufficiency of the aortic valve, leading to regurgitation (backward flow) of blood from the aorta into the left ventricle." [HPO:curators]
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 HP:0001660 Persistant truncus arteriosus "Persistent Truncus Arteriosus results from a failure of the truncus arteriosus to close." [HPO:curators]
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 HP:0001669 Transposition of the great vessels 
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 HP:0001671 Abnormality of the cardiac septa 
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 HP:0001674 Complete atrioventricular canal "A congenital malformation characterized by atrial septal defect, ventricular septal defect), and abnormalities of the tricuspid and mitral valves." [HPO:curators]
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 HP:0001680 Coarctation of aorta "Coarctation of the aorta is a narrowing or constriction of the aorta just distal to the origin of the left subclavian artery." [HPO:curators]
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 HP:0001682 Subaortic stenosis "A fixed form of obstruction to blood flow across the left-ventricular outflow tract related to stenosis (narrowing) below the level of the aortic valve." [HPO:curators]
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 HP:0001684 Secundum atrial septal defect 
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 HP:0001712 Left ventricular hypertrophy 
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 HP:0001718 Mitral stenosis 
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 HP:0001719 Double outlet right ventricle 
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 HP:0001939 Metabolism abnormality 
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 HP:0002019 Constipation 
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 HP:0002916 Abnormality of the chromosomes "A cytogenetically visible chromosomal abnormality." [HPO:curators]
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 HP:0003270 Abdominal distention "Enlargement or distention of the abdomen, which can be a secondary feature associated with a number of conditions such as bowel obstruction." [HPO:curators]
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004380 Aortic valve calcification 
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 HP:0004383 Hypoplastic left heart 
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 HP:0004415 Pulmonary artery stenosis 
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 HP:0004467 Preauricular sinus "The preauricular sinus is a benign congenital lesion of the preauricular soft tissue consisting of a blind-ending narrow tube or pit. It is also known as preauricular pit, preauricular fistula, preauricular tract and preauricular cyst. It can be asymptomatic or present as an infected and discharging sinus. It presents as a small pit adjacent to the external ear usually located at the anterior margin of the ascending limb of the helix." [HPO:curators]
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 HP:0004933 ascending aortic dissection 
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 HP:0004935 Pulmonary artery atresia 
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 HP:0004962 Thoracic aorta calcification 
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 HP:0005105 Abnormal nasal morphology 
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 HP:0005110 Atrial fibrillation 
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 HP:0005113 Dilatation of the aortic arch 
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 HP:0005990 Hypoplastic thyroid 
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 HP:0006887 Mental retardation, progressive "Mental retardation is defined as a decreased intelligence quotient of varying degree. The term progressive mental retardation should be used if intelligence decreases/deteriorates over time." [HPO:curators]
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 HP:0008191 Athyroidal hypothyroidism 
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 HP:0009800 maternal diabetes "Maternal diabetes can either be a gestational, mostly type 2 diabetes, or a type 1 diabetes. Essential is the resulting maternal hyperglycemia as a non-specific teratogen, imposing the same risk of congenital malformations to pregnant women with both type 1 and type2 diabetes." [HPO:curators]
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 HP:0009891 Hypoplasia of the supraorbital ridges "Underdevelopment of the supraorbital ridges." [HPO:curators]
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 HP:0010055 Broad hallux 
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0010883 Aortic valve atresia "A congenital disorder of the aortic valve in which the orifice of the valve fails to develop." [HPO:probinson]
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 HP:0011103 Abnormality of the left ventricular outflow tract "An abnormality of the `outflow tract of the left ventricle` (FMA:9473)." [HPO:probinson]
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 HP:0011560 Mitral atresia "A congenital defect with failure to open of the mitral valve orifice." [DDD:dbrown]
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0011710 Bundle branch block "Block of conduction of electrical impulses along the Bundle of His or along one of its bundle branches." [DDD:dbrown, HPO:probinson]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012248 Prolonged PR interval "Increased time for the PR interval (beginning of the P wave to the beginning of the QRS complex)." [HPO:probinson]
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 HP:0012304 Hypoplastic aortic arch "Underdevelopment of the `arch of aorta`(FMA:3768)." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0030148 Heart murmur "An extra or unusual sound heard during a heartbeat caused vibrations resulting from the flow of blood through the heart." [HPO:probinson]
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 HP:0100028 Ectopic thyroid "`Mislocalised` (PATO:0000628) `thyroid gland` (FMA:9603)." [HPO:sdoelken]
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 HP:0100259 Postaxial polydactyly "A form of polydactyly in which the extra digit or digits are localized on the side of the fifth finger or fifth toe." [HPO:probinson]
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 HP:0100786 Hypersomnia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000064393 HIPK2 / Q9H2X6 / homeodomain interacting protein kinase 2  / complex
 ENSG00000163349 HIPK1 / Q86Z02 / homeodomain interacting protein kinase 1  / complex
 ENSG00000136574 GATA4 / P43694 / GATA binding protein 4  / complex






 

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