ENSG00000180053


Homo sapiens

Features
Gene ID: ENSG00000180053
  
Biological name :NKX2-6
  
Synonyms : A6NCS4 / NK2 homeobox 6 / NKX2-6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: -1
Band: p21.2
Gene start: 23702451
Gene end: 23706598
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSP00000320089
NCBI entrez gene - 137814     See in Manteia.
OMIM - 611770
RefSeq - NM_001136271
RefSeq Peptide - NP_001129743
swissprot - A6NCS4
Ensembl - ENSG00000180053
  
Related genetic diseases (OMIM): 217095 - Conotruncal heart malformations, 217095

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nkx2.3ENSDARG00000039095Danio rerio
 nkx2.5ENSDARG00000018004Danio rerio
 nkx2.7ENSDARG00000021232Danio rerio
 Nkx2-6ENSMUSG00000044186Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NKX2-3 / Q8TAU0 / NK2 homeobox 3ENSG0000011991951
NKX2-5 / P52952 / NK2 homeobox 5ENSG0000018307242
NKX2-4 / Q9H2Z4 / NK2 homeobox 4ENSG0000012581637
NKX2-1 / P43699 / NK2 homeobox 1ENSG0000013635234
NKX2-2 / O95096 / NK2 homeobox 2ENSG0000012582033
NKX2-8 / O15522 / NK2 homeobox 8ENSG0000013632728
NKX3-2 / P78367 / NK3 homeobox 2ENSG0000010970526
HMX1 / Q9NP08 / H6 family homeobox 1ENSG0000021561223
NKX3-1 / Q99801 / NK3 homeobox 1ENSG0000016703422
HMX3 / A6NHT5 / H6 family homeobox 3ENSG0000018862022
HMX2 / A2RU54 / H6 family homeobox 2ENSG0000018881620


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IDA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0021854 hypothalamus development IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0035050 embryonic heart tube development IMP
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0043586 tongue development IEA
 biological_processGO:0048565 digestive tract development IEA
 biological_processGO:0055014 atrial cardiac muscle cell development IEA
 biological_processGO:0055015 ventricular cardiac muscle cell development IEA
 biological_processGO:0060037 pharyngeal system development IEA
 biological_processGO:0060039 pericardium development IEA
 cellular_componentGO:0005634 nucleus IC
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISM
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000233 Thin vermillion border 
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 HP:0000268 Dolichocephaly 
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 HP:0000316 Hypertelorism 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000520 Proptosis 
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 HP:0001156 Brachydactyly 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0001660 Persistant truncus arteriosus "Persistent Truncus Arteriosus results from a failure of the truncus arteriosus to close." [HPO:curators]
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 HP:0001669 Transposition of the great vessels 
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 HP:0001674 Complete atrioventricular canal "A congenital malformation characterized by atrial septal defect, ventricular septal defect), and abnormalities of the tricuspid and mitral valves." [HPO:curators]
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 HP:0001680 Coarctation of aorta "Coarctation of the aorta is a narrowing or constriction of the aorta just distal to the origin of the left subclavian artery." [HPO:curators]
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 HP:0001719 Double outlet right ventricle 
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 HP:0001939 Metabolism abnormality 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004467 Preauricular sinus "The preauricular sinus is a benign congenital lesion of the preauricular soft tissue consisting of a blind-ending narrow tube or pit. It is also known as preauricular pit, preauricular fistula, preauricular tract and preauricular cyst. It can be asymptomatic or present as an infected and discharging sinus. It presents as a small pit adjacent to the external ear usually located at the anterior margin of the ascending limb of the helix." [HPO:curators]
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 HP:0005105 Abnormal nasal morphology 
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 HP:0009891 Hypoplasia of the supraorbital ridges "Underdevelopment of the supraorbital ridges." [HPO:curators]
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 HP:0010055 Broad hallux 
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 HP:0100259 Postaxial polydactyly "A form of polydactyly in which the extra digit or digits are localized on the side of the fifth finger or fifth toe." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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