ENSDARG00000039095


Danio rerio

Features
Gene ID: ENSDARG00000039095
  
Biological name :nkx2.3
  
Synonyms : NK2 homeobox 3 / nkx2.3
  
Possible biological names infered from orthology : A6NCS4 / Homeobox protein Nkx-2.3 / Homeobox protein Nkx-2.5 / Homeobox protein Nkx-2.6 / NK2 homeobox 5 / NK2 homeobox 6 / NKX2-5 / NKX2-6 / P42582 / P43688 / P52952 / P97334 / Q8TAU0
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 40409215
Gene end: 40411917
  
Corresponding Affymetrix probe sets: Dr.269.1.S1_at (Zebrafish Array)   NM_131423_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000057093
Ensembl peptide - ENSDARP00000123711
NCBI entrez gene - 30698     See in Manteia.
RefSeq - NM_131423
RefSeq Peptide - NP_571498
swissprot - F8W5C7
swissprot - Q98871
ZFIN ID - ZDB-GENE-990415-178
Ensembl - ENSDARG00000039095
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 A6NCS4ENSG00000180053Homo sapiens
 NKX2-3ENSG00000119919Homo sapiens
 NKX2-5ENSG00000183072Homo sapiens
 Nkx2-3ENSMUSG00000044220Mus musculus
 Nkx2-5ENSMUSG00000015579Mus musculus
 Nkx2-6ENSMUSG00000044186Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nkx2.7 / NK2 transcription factor related 7 / Q8TAU0* / NKX2-6* / P42582* / P43688* / P52952* / P97334* / A6NCS4* / NKX2-3* / NKX2-5* / NK2 homeobox 3* / NK2 homeobox 5* / NK2 homeobox 6* /...ENSDARG0000002123243
nkx2.5 / NK2 homeobox 5 / Q8TAU0* / P42582* / P43688* / P52952* / P97334* / A6NCS4* / NKX2-3* / NKX2-6* / NK2 homeobox 3* / NK2 homeobox 6* / Homeobox protein Nkx-2.6 * / Homeobox protein N...ENSDARG0000001800441
nkx2.1 / NK2 homeobox 1 / Q9H2Z4* / P43699* / P50220* / Q9EQM3* / NKX2-4* / NK2 homeobox 4* / Homeobox protein Nkx-2.1 * / Homeobox protein Nkx-2.4 *ENSDARG0000001983531
Q90481 / nkx2.2a / NK2 homeobox 2a / NKX2-2* / O95096* / NK2 homeobox 2*ENSDARG0000005329830
nkx2.4a / NK2 homeobox 4aENSDARG0000007510728
nkx2.4b / NK2 homeobox 4bENSDARG0000010410728
nkx3.2 / NK3 homeobox 2 / P78367*ENSDARG0000003763923
nkx2.2b / NK2 homeobox 2bENSDARG0000010154923
hmx3a / H6 family homeobox 3a / HMX3* / P42581* / A6NHT5* / H6 family homeobox 3* / Homeobox protein HMX3 *ENSDARG0000007095520
nkx3.3 / NK3 homeobox 3ENSDARG0000006932720
hmx3b / H6 family homeobox 3bENSDARG0000009671618
hmx4 / H6 family homeobox 4ENSDARG0000000794117
hmx1 / H6 family homeobox 1 / O70218* / Q9NP08* / Homeobox protein HMX1 *ENSDARG0000009565117
nkx3-1 / NK3 homeobox 1 / P97436* / Q99801*ENSDARG0000007828017
hmx2 / H6 family homeobox 2 / A2RU54* / P43687* / Homeobox protein HMX2 *ENSDARG0000007095416


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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