ENSDARG00000104107


Danio rerio

Features
Gene ID: ENSDARG00000104107
  
Biological name :nkx2.4b
  
Synonyms : NK2 homeobox 4b / nkx2.4b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 48803248
Gene end: 48806728
  
Corresponding Affymetrix probe sets: Dr.10342.1.S1_at (Zebrafish Array)   NM_131589_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000138951
NCBI entrez gene - 58112     See in Manteia.
RefSeq - NM_131589
RefSeq Peptide - NP_571664
swissprot - A5WVY6
ZFIN ID - ZDB-GENE-000830-1
Ensembl - ENSDARG00000104107
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nkx2.4a / NK2 homeobox 4aENSDARG0000007510779
nkx2.1 / NK2 homeobox 1 / Q9H2Z4* / P43699* / P50220* / Q9EQM3* / NKX2-4* / NK2 homeobox 4* / Homeobox protein Nkx-2.1 * / Homeobox protein Nkx-2.4 *ENSDARG0000001983564
Q90481 / nkx2.2a / NK2 homeobox 2a / NKX2-2* / O95096* / NK2 homeobox 2*ENSDARG0000005329831
nkx2.3 / NK2 homeobox 3 / Q8TAU0* / P42582* / P43688* / P52952* / P97334* / A6NCS4* / NKX2-5* / NKX2-6* / NK2 homeobox 5* / NK2 homeobox 6* / Homeobox protein Nkx-2.6 * / Homeobox protein N...ENSDARG0000003909530
nkx2.5 / NK2 homeobox 5 / Q8TAU0* / P42582* / P43688* / P52952* / P97334* / A6NCS4* / NKX2-3* / NKX2-6* / NK2 homeobox 3* / NK2 homeobox 6* / Homeobox protein Nkx-2.6 * / Homeobox protein N...ENSDARG0000001800429
nkx2.7 / NK2 transcription factor related 7 / Q8TAU0* / NKX2-6* / P42582* / P43688* / P52952* / P97334* / A6NCS4* / NKX2-3* / NKX2-5* / NK2 homeobox 3* / NK2 homeobox 5* / NK2 homeobox 6* /...ENSDARG0000002123228
nkx2.2b / NK2 homeobox 2bENSDARG0000010154927
nkx3.2 / NK3 homeobox 2 / P78367*ENSDARG0000003763920
nkx3.3 / NK3 homeobox 3ENSDARG0000006932719
hmx3a / H6 family homeobox 3a / HMX3* / P42581* / A6NHT5* / H6 family homeobox 3* / Homeobox protein HMX3 *ENSDARG0000007095518
hmx1 / H6 family homeobox 1 / O70218* / Q9NP08* / Homeobox protein HMX1 *ENSDARG0000009565116
nkx3-1 / NK3 homeobox 1 / P97436* / Q99801*ENSDARG0000007828016
hmx3b / H6 family homeobox 3bENSDARG0000009671616
hmx2 / H6 family homeobox 2 / A2RU54* / P43687* / Homeobox protein HMX2 *ENSDARG0000007095415
hmx4 / H6 family homeobox 4ENSDARG0000000794115


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0021854 hypothalamus development IGI
 biological_processGO:0030878 thyroid gland development IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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